Gene Information

Name : PALO_01515 (PALO_01515)
Accession : YP_007870289.1
Strain : Propionibacterium avidum 44067
Genome accession: NC_021064
Putative virulence/resistance : Virulence
Product : iron ABC transporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 327517 - 328437 bp
Length : 921 bp
Strand : -
Note : COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin

DNA sequence : 
ATGCATCGCTCCCTTCACGCCATGGTCATCGGGCTCGTCGCGGCAGTCGCGCTCGCCCTAACTGGCTGCGGCGCTGCCAA
TCCCCCGAAATCACACAACAAACCCGTCGTCCTCACCACTTTCACCGTGTTGCAGGACATCGCGAGGAACATTGCCGGCG
ACGACCTGACGGTCGAGTCGATCACCAAGCCCGGCGCCGAGATCCACGACTACGAGCCCACCCCCGACGACATCAAGAAG
GCGTCGAAGGCCGATCTCATTCTCGACAACGGGCTGGGCCTGGAGCGCTGGTTCCAGAAGTTCGTGGAATCCGCCGACGT
CCCGCACGTCGTCGTCTCCGAGGGCGTCGAACCGATGAACATCGCCGAGGACGAGTACGCCGGCAAGCCGAACCCGCACG
CCTGGATGAGCCCGAAGAATGTCCAGATCTACACTGACAACATCGTCAAGGCCTTCAGCAAACTCGACCCCGACCATGCC
AAGGACTACAAGTCCAACGGAGACACCTACAAGGAGAAACTCCAGAAGGTCACCGATGACATGACCCACCAGTTGTCCGC
CCTGCCGCGCAATGAGCGTGCCCTGGTCAGCTGCGAAGGCGCCTTCTCCTACCTCGCTCGGGACACCGACCTGACCGAGA
AGTACCTCTGGGCCGTCAATGCCAATCAGGAGGGCACACCGAAGCAGATCGCCTCGGCGATCGACTTCGTCAGGAAGAAC
AAGGTTCCGGCCGTGTTCTGCGAATCCACGGTTTCCCTCAAACCCATGAAGCAGGTCGTCAACTCCACCGGGGCGAAGTT
CGGCGGCACCCTCTACGTCGATTCCCTCTCCAAGGCCGACGGACCGGTCCCGACCTACCTCGATCTCATCAACTACGACG
CCCGCACCATCACCACTGCCCTCACCGGAAAGAAGTCATGA

Protein sequence : 
MHRSLHAMVIGLVAAVALALTGCGAANPPKSHNKPVVLTTFTVLQDIARNIAGDDLTVESITKPGAEIHDYEPTPDDIKK
ASKADLILDNGLGLERWFQKFVESADVPHVVVSEGVEPMNIAEDEYAGKPNPHAWMSPKNVQIYTDNIVKAFSKLDPDHA
KDYKSNGDTYKEKLQKVTDDMTHQLSALPRNERALVSCEGAFSYLARDTDLTEKYLWAVNANQEGTPKQIASAIDFVRKN
KVPAVFCESTVSLKPMKQVVNSTGAKFGGTLYVDSLSKADGPVPTYLDLINYDARTITTALTGKKS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-75 58
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 4e-75 58
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 4e-75 58
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 4e-75 58
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 3e-75 58

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PALO_01515 YP_007870289.1 iron ABC transporter BAC0349 Protein 2e-75 58
PALO_01515 YP_007870289.1 iron ABC transporter BAC0439 Protein 6e-71 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PALO_01515 YP_007870289.1 iron ABC transporter VFG0525 Protein 2e-75 58