Gene Information

Name : PALO_07485 (PALO_07485)
Accession : YP_007871469.1
Strain : Propionibacterium avidum 44067
Genome accession: NC_021064
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1645980 - 1646690 bp
Length : 711 bp
Strand : +
Note : COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGTCGCCGTTGATCAGTGCCGTGGGGGTACGCAAGGGTTTCGGAAAGGGATCCCAACGGATCGAAGTGCTCAGGGGAGT
CGATCTCGAGGTTGGTCCTGGCGAGTTCGTCGCCATCGTCGGGTCCTCGGGAGCAGGCAAGTCGACGCTGCTGTATTGCT
TGTGCGGTCTCATCGCCGCCGATGGCGGGAGTATCGCCCTGGCCGGCAACGACCTCGGTTCGGCTAGTCGTTCTGAGCTC
GCACGGATACGCCGCGATCACGTCGGGGTTGTCTTCCAGGACCTCAACCTCATCAGTTCCCTCAACGTCCGTGACAATGT
CCGCCTGCCTGCGCGACTGGCAGGGATGAGGCCGCGCCGACGTGATGTCATGCACGCCCTGGAGACCGTCGGGCTGGCCT
CCTGCGCCGACAAGTACCCGAACCACCTGTCCGGCGGACAGCGTCAACGGGTGGCGATAGCGCGGTCCCTGGTCCGGGCT
CCCCAGGTACTCTTCGCTGACGAGCCGACCGGGTCTCTCGACGTCGCCTCTCGGGAGACCGTCCTCGATCTGCTTCGCGA
GACCGTGACCGACAGCACCTCTTTGGTCATGATCACCCATGATCTGGACATCGCAGCCACCGCAGATCGCGTCATTGTTC
TCGCGAATGGCCATCATGACCGGGTCCTGACCCACCCAACCTCCGAGGAACTCTTCGAGACCATGCACTGA

Protein sequence : 
MSPLISAVGVRKGFGKGSQRIEVLRGVDLEVGPGEFVAIVGSSGAGKSTLLYCLCGLIAADGGSIALAGNDLGSASRSEL
ARIRRDHVGVVFQDLNLISSLNVRDNVRLPARLAGMRPRRRDVMHALETVGLASCADKYPNHLSGGQRQRVAIARSLVRA
PQVLFADEPTGSLDVASRETVLDLLRETVTDSTSLVMITHDLDIAATADRVIVLANGHHDRVLTHPTSEELFETMH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-76 64
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-76 64
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 9e-76 64
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-69 64
unnamed ABA47263.1 ABC transporter Not tested S-PAI Protein 4e-23 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PALO_07485 YP_007871469.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 2e-32 43
PALO_07485 YP_007871469.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 6e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PALO_07485 YP_007871469.1 ABC transporter ATP-binding protein VFG2059 Protein 1e-12 44