Gene Information

Name : clpB (F750_3400)
Accession : YP_007860351.1
Strain : Streptomyces sp. PAMC26508
Genome accession: NC_021055
Putative virulence/resistance : Virulence
Product : ClpB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3579865 - 3582465 bp
Length : 2601 bp
Strand : -
Note : -

DNA sequence :
GTGGACGCCGAGCTGACCAACAAGAGCCGGGACGCCCTCAACGCGGCCACCGCAAGGGCCGTCAAGGACGGACACCCGGA
CCTGACCCCCGGGCACCTGCTGCTGGCGTTGCTCGCGGGCGAGGACAACGCCAACATCACCGATCTGCTGGCCTCCGTCG
AGGCCGACCAGGTGGTCGTGCGCGAGGAGACCGAGCGGCTCCTCGGCGCGCTGCCCAGCGTCACCGGGTCGACCGTCGCG
CCGCCGCAGCCCAGCCGCGAGCTGCTCGCCGTCCTCGCCGACGCCGACCGGCGCGCCAAGGAGCTCGGTGACGACTACCT
CTCCACCGAGCACCTGCTCATCGCCGTCGCGGCGAAGGGCGGCCGCGCCGGTGAGATCCTCGACGGGCAGGGAGCCGGCG
CGAAGAAGCTGCTGGACGCATTCGAGAAGAGCAGGGGAGGGCGCCGGGTGACCACTCCCGACCCCGAAGGCCAGTACAAG
GCGCTGGAGAAGTTCGGCACCGACTTCACCGCGGCCGCCCGCGAGGGCAAGCTCGACCCGGTCATCGGCCGTGACCAGGA
GATCCGCCGGGTCGTGCAGGTGCTGTCGCGCCGTACGAAGAACAACCCCGTGCTCATCGGTGAGCCCGGCGTCGGCAAGA
CGGCCGTGGTCGAGGGGCTCGCCCAGCGCATCGTCAAGGGCGACGTCCCCGAGTCCCTCCGGAACAAGCGGCTCGTCTCC
CTGGACCTGGGCGCGATGGTCGCGGGTGCCAAGTACCGCGGCGAGTTCGAGGAACGCCTGAAGACCGTCCTCTCCGAGAT
CAAGGAGAGCGACGGGCAGATCATCACCTTCATCGACGAGCTGCACACGGTCGTCGGCGCGGGCGCGGGCGGCGACTCCG
CGATGGACGCGGGCAACATGCTGAAGCCGATGCTCGCCCGCGGTGAGCTGCGGATGGTCGGCGCCACCACGCTCGACGAG
TACCGCGAGCGCATCGAGAAGGACCCCGCCCTGGAACGCCGCTTCCAGCAGGTCCTGGTGGCCGAGCCGTCCGTCGAGGA
CACCATCGCGATCCTGCGTGGCCTCAAGGGCCGCTACGAGGCACACCACAAGGTCCAGATCGCCGACTCCTCGCTGGTGG
CCGCCGCGACCCTCTCGGACCGCTACATCACCTCCCGCTTCCTCCCCGACAAGGCGATCGACCTCGTCGACGAGGCGGCC
TCCCGGCTCCGCATGGAGATCGACTCCTCGCCCCTGGAGATCGACGAGCTCCAGCGCTCCGTGGACCGGCTGCACATGGA
GGAGCTGGCGCTCAGGAACGAGACCGACCAGGGCTCCAAGCAGCGGCTCGAGAAGATCCGCCGCGACCTCGCCGACAAGG
AGGAGGAGCTGCGCGGTCTGACCGCCCGCTGGGAGAAGGAGAAGCAGGGCCTGAACCGCGTCGGCGAGCTGAAGGAACGC
CTCGACGAACTGCGCGGCCAGGCCGAGCGTGCCCAGCGCGACGGAGACTTCGACACCGCGTCCAAGCTGCTCTACGGCGA
GATCCCCGGACTGGAGCGCGAGCTGGCCGAGGCGGACGAGGCCGAGCAGGAGGCCGCCGTCGACACCATGGTCAAGGAGG
AGGTCGGCCCGGACGACATCGCCGACGTCGTCGGCGCATGGACCGGCATCCCGGCCGGACGCCTGCTGGAGGGCGAGACG
CAGAAGCTCCTGCGCATGGAGTCCGAGCTGGGCAGGCGGCTGATCGGGCAGGGCGAGGCCGTCCGGGCCGTGTCGGACGC
CGTACGCCGCACCCGCGCCGGGATCGCCGACCCCGACCGGCCCACCGGCTCGTTCCTCTTCCTCGGCCCGACCGGGGTCG
GCAAGACGGAGCTGGCCAAGGCGCTCGCGGACTTCCTCTTCGACGACGAGCGGGCCATGATCCGCATCGACATGAGCGAG
TACGGCGAGAAGCACAGCGTCGCCCGGCTCGTCGGTGCCCCGCCCGGCTACGTCGGCTACGAGGAGGGCGGCCAGCTCAC
GGAGGCGGTGCGCCGCCGCCCGTACAGCGTCGTGCTGCTGGACGAGGTCGAGAAGGCCCACCCCGAGGTCTTCGACATCC
TGCTCCAGGTGCTCGACGACGGCCGGCTCACCGACGGTCAGGGCCGGACGGTGGACTTCCGCAACACCATCCTGGTCCTC
ACGTCGAACCTGGGCAGTCAGTTCCTGGTCGACCCCCTGACCGGGCCCGAGGTGAAGAAGGAGCGGGTGCTGGACGTCGT
ACGCGCCTCGTTCAAGCCGGAGTTCCTCAACCGGCTCGACGACCTGGTCGTCTTCTCCGCCCTCTCCGGGGACGAGCTGG
CCCACATCGCGGGGCTCCAGGTGGCCCGTCTCGCCGACCGGCTGGCCGACCGCCGCATCCGGCTGGACGTCACCCCGGAC
GCCCTGGCCTGGCTGGCCGAGGAGGGCAACGACCCGGCGTACGGCGCCCGGCCGCTGCGCCGCCTGATCCAGACCGCGAT
CGGCGACCGGCTCGCCAGGGAGATCCTCGCCGGCGAGGTCAAGGACGGCGACACGGTCCGTGTGGACCGGGCCGGCGACG
GACTGACCGTGGGTCCCGCTCCGGCGCCGAAGACCCTGTAG

Protein sequence :
MDAELTNKSRDALNAATARAVKDGHPDLTPGHLLLALLAGEDNANITDLLASVEADQVVVREETERLLGALPSVTGSTVA
PPQPSRELLAVLADADRRAKELGDDYLSTEHLLIAVAAKGGRAGEILDGQGAGAKKLLDAFEKSRGGRRVTTPDPEGQYK
ALEKFGTDFTAAAREGKLDPVIGRDQEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLRNKRLVS
LDLGAMVAGAKYRGEFEERLKTVLSEIKESDGQIITFIDELHTVVGAGAGGDSAMDAGNMLKPMLARGELRMVGATTLDE
YRERIEKDPALERRFQQVLVAEPSVEDTIAILRGLKGRYEAHHKVQIADSSLVAAATLSDRYITSRFLPDKAIDLVDEAA
SRLRMEIDSSPLEIDELQRSVDRLHMEELALRNETDQGSKQRLEKIRRDLADKEEELRGLTARWEKEKQGLNRVGELKER
LDELRGQAERAQRDGDFDTASKLLYGEIPGLERELAEADEAEQEAAVDTMVKEEVGPDDIADVVGAWTGIPAGRLLEGET
QKLLRMESELGRRLIGQGEAVRAVSDAVRRTRAGIADPDRPTGSFLFLGPTGVGKTELAKALADFLFDDERAMIRIDMSE
YGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNTILVL
TSNLGSQFLVDPLTGPEVKKERVLDVVRASFKPEFLNRLDDLVVFSALSGDELAHIAGLQVARLADRLADRRIRLDVTPD
ALAWLAEEGNDPAYGARPLRRLIQTAIGDRLAREILAGEVKDGDTVRVDRAGDGLTVGPAPAPKTL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 1e-98 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
clpB YP_007860351.1 ClpB VFG2084 Protein 3e-105 42