Gene Information

Name : ROI_09330 (ROI_09330)
Accession : YP_007831189.1
Strain : Roseburia intestinalis M50/1
Genome accession: NC_021040
Putative virulence/resistance : Resistance
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 936204 - 936812 bp
Length : 609 bp
Strand : +
Note : -

DNA sequence : 
ATGATTATAATTCGTGGCTTAAATAAAGCATTTGGAGAGAAAATAATTTTCTCCAACTTTAATTTGGAAATTCCGGATGG
AAGTTTTGTAGTAATCAGCGGGGATAGCGGCAGTGGAAAAAGCACTTTGCTCAATATGATTGGTGGTATCGAAAAGCCGG
ATAGCGGCAGTATCATAATCGAAGGGCTGAATATTACCCGGCTTAAAAATAAAAACAGTTTTTTTGCGGATACAGTGGGG
TTTCTTTTTCAGAATTTTGCACTGCTTGAAAATAAGACAGTTAAAGAAAATTTAAGTTTGATTAAAAAATCAAGCCGAAC
TAAAGTATCACTTAAAGAAGCTCTTAATCGTGTGGGGTTATCAAAGGAAGTTAACAAAAAAGTTTATCAGCTTTCCGGTG
GTGAACAACAGAGAGTTGCTTTAGCTCGTCTTATGATGAAAAAATGTTCTGTTGTTTTGGCAGATGAACCTACTGGCTCA
CTTGACAAGAAAAATAGAGATATTGTTATGAGGTTATTGCACGAACTCAATGAAGAAGGTAAAACGGTTATCATTGTTAC
CCACGATCAGGGTATTATTGAAGATGAACCTTATGTTGTGAAAATCTGA

Protein sequence : 
MIIIRGLNKAFGEKIIFSNFNLEIPDGSFVVISGDSGSGKSTLLNMIGGIEKPDSGSIIIEGLNITRLKNKNSFFADTVG
FLFQNFALLENKTVKENLSLIKKSSRTKVSLKEALNRVGLSKEVNKKVYQLSGGEQQRVALARLMMKKCSVVLADEPTGS
LDKKNRDIVMRLLHELNEEGKTVIIVTHDQGIIEDEPYVVKI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 1e-37 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ROI_09330 YP_007831189.1 ABC-type antimicrobial peptide transport system, ATPase component NC_012469.1.7686946. Protein 2e-32 47
ROI_09330 YP_007831189.1 ABC-type antimicrobial peptide transport system, ATPase component NC_012469.1.7686878. Protein 3e-28 43
ROI_09330 YP_007831189.1 ABC-type antimicrobial peptide transport system, ATPase component NC_012469.1.7685735. Protein 1e-25 42