Gene Information

Name : ROI_04930 (ROI_04930)
Accession : YP_007830824.1
Strain : Roseburia intestinalis M50/1
Genome accession: NC_021040
Putative virulence/resistance : Virulence
Product : Sugar transferases involved in lipopolysaccharide synthesis
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 491254 - 491862 bp
Length : 609 bp
Strand : +
Note : -

DNA sequence : 
ATGACAGGATACCGTTATATAAAACGAATCATAGATATCTTACTCAGCGGACTTGCGATTATTATATTGTCCCCGCTGCT
TTTGATCTTATGCATTGCAATCAAATTAGATTCACCGGGACCAATCTTCTTTACACAAAAGAGAGTCGGCATCCACAAGA
CATATTTCCAGATTTATAAATTCCGGACCATGCGCACCGATACACCGAAAGATATGCCGACACATATGCTGGCAAATCCG
GAACAGTACATTACAAAAACCGGCAGATTTCTTCGTAAGACCAGCCTCGATGAGCTGCCACAGATCTTTAATATTTTTAA
GGGGGATATGAGTATCGTAGGTCCTCGCCCGGCACTCTGGAATCAGGATGACCTTGTCGCAGAGCGTGACAAATACGGTG
CAAATGATGTGACACCGGGATTAACCGGTTGGGCGCAGATCAACGGACGTGACGAACTTGAAATTCCGGTCAAGGCAAAA
TTAGATGGCGAGTATGTGAAAAAATATGGGTTTACAATGGATGTACGGTGTTTCTTTGGTACATTCTTAAGCGTTTTGAG
ACAGGATGGAGTGGTTGAAGGTGGAACAGGGAGCATGAAGGGGAAATGA

Protein sequence : 
MTGYRYIKRIIDILLSGLAIIILSPLLLILCIAIKLDSPGPIFFTQKRVGIHKTYFQIYKFRTMRTDTPKDMPTHMLANP
EQYITKTGRFLRKTSLDELPQIFNIFKGDMSIVGPRPALWNQDDLVAERDKYGANDVTPGLTGWAQINGRDELEIPVKAK
LDGEYVKKYGFTMDVRCFFGTFLSVLRQDGVVEGGTGSMKGK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0070 YP_300160.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 5e-32 51
cap1N AAL26667.1 type 8 capsule synthesis gene Virulence SCCcap1 Protein 7e-31 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ROI_04930 YP_007830824.1 Sugar transferases involved in lipopolysaccharide synthesis VFG1369 Protein 1e-44 64
ROI_04930 YP_007830824.1 Sugar transferases involved in lipopolysaccharide synthesis VFG1309 Protein 4e-30 45