Gene Information

Name : ROI_12230 (ROI_12230)
Accession : YP_007831437.1
Strain : Roseburia intestinalis M50/1
Genome accession: NC_021040
Putative virulence/resistance : Resistance
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1220646 - 1221341 bp
Length : 696 bp
Strand : -
Note : -

DNA sequence :

ATGGAAATATTGAAAGTACAAGATTTATGTAAAACTTATGGCAAGGGTGAGGCGAAAGTCGAAGCGTTGAAGAAGGTTTC
CTTCTCCCTGGATAAAGGCGAATTTGCTACCGTTGTGGGTGAATCCGGTTCTGGCAAAAGCACATTACTGAACTGTATTG
GAGCTTTGGATACCCCTACTTCCGGCCATATTTGGATTGATGAACAAGACCTGTTTTCCATGAAAGAGGAACAGCGCACG
ATTTTCCGCCGTCGTAATATCGGCTTTATCTTCCAATCCTTTCAGTTGGTTTCCGAGCTGAATGTGGAGCAGAATATCAT
GTTTCCGCTTCTTTTGGACTATCGCAAACCAGACCCGGCAGCAGTAGAAGAAATTTTGGAACTCTTGGGACTTACCGAGC
GTCGACATCACCTGCCGAGCCAACTATCCGGCGGACAGCAGCAGCGTGTTGCCATTGGCCGGGCGTTAATCACAAAGCCC
AAACTGATTCTGGCAGATGAACCTACTGGCAATCTGGACAGCAAGAATAGTCAGGATGTTATCGCCCTGCTTACGCAGGC
GTCCCGTCGCTATCAGCAAACAATCCTGATGATTACCCACAATAAGGATTTGACTGCATCCGTTGATCGGGTGTTCCGGG
TATCAGATGGCGTTTTGACGGATTTGGGAGGAAAAACAAATGAAGCATTATCTTGA

Protein sequence :

MEILKVQDLCKTYGKGEAKVEALKKVSFSLDKGEFATVVGESGSGKSTLLNCIGALDTPTSGHIWIDEQDLFSMKEEQRT
IFRRRNIGFIFQSFQLVSELNVEQNIMFPLLLDYRKPDPAAVEEILELLGLTERRHHLPSQLSGGQQQRVAIGRALITKP
KLILADEPTGNLDSKNSQDVIALLTQASRRYQQTILMITHNKDLTASVDRVFRVSDGVLTDLGGKTNEALS

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
Cp1002_1464	YP_005681730.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	1e-37	44
CpC231_1466	YP_005683828.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	8e-38	43
cpfrc_01473	YP_003783873.1	hypothetical protein	Not tested	PiCp 5	Protein	8e-38	43
CpI19_1473	YP_005685914.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	8e-38	43
unnamed	AAP55232.1	unknown	Not tested	SaPIbov2	Protein	5e-37	42

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
ROI_12230	YP_007831437.1	ABC-type antimicrobial peptide transport system, ATPase component	CP001581.1.gene798.p	Protein	5e-75	69
ROI_12230	YP_007831437.1	ABC-type antimicrobial peptide transport system, ATPase component	CP001581.1.gene598.p	Protein	2e-53	54
ROI_12230	YP_007831437.1	ABC-type antimicrobial peptide transport system, ATPase component	NC_012469.1.7686878.	Protein	2e-41	42
ROI_12230	YP_007831437.1	ABC-type antimicrobial peptide transport system, ATPase component	NC_008702.1.4606598.	Protein	1e-34	41