Gene Information

Name : RUM_12400 (RUM_12400)
Accession : YP_007829381.1
Strain : Ruminococcus champanellensis 18P13
Genome accession: NC_021039
Putative virulence/resistance : Resistance
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1370677 - 1371345 bp
Length : 669 bp
Strand : +
Note : -

DNA sequence :

ATGCCGATACTGAATGTTTGTAATCTATGCAAAACATATCAAGCGGGAGAGGCAGAGGTTAAAGCACTTGACAATGTATC
TTTTACCGTAGAAAAAGGCGAATTTGTTTCTATCATCGGTCCGTCGGGATCGGGAAAATCGACCTTGTTACATATCCTTG
CCGGTATTGACCGCCCCACCTCCGGCAAGGTGTATGTAGATGGTGAGGATATATATGCCAAGAGCGAAAAGGAGCTTGCC
TATTATCGCAGACGAAAGGCGGGCTTAATCTATCAGTTTTATAATCTCGTTCCCACTTTGACGGTTGAGGAAAACATAAC
GCTCCCTTGCCGCCTTGATAAAAAGAAAACCGACAAAGAAACGCTTGACCGATTGCTGGATACGCTTGGAATGAAAGAGC
GAAGAAGTCATCTGCCGAGCCAGCTTTCAGGCGGTCAGCAACAACGCTGTGCCATAGGCAGAGTTTTATTTACAAATCCT
GCGCTTATGCTTGCCGACGAACCGACAGGAAATCTTGACAGCAAAAGTGCAGCAGAGGTAATGGAGCTTCTGGGGAGTGC
AAATAAACAATACGGTCAAACGCTCATTATGATTACGCACAATTTGGAGCTTGCAAAGTTGGCAGACCGTATGCTTATCA
TCAAGGACGGTAAGCTCTCGGAGGGATAA

Protein sequence :

MPILNVCNLCKTYQAGEAEVKALDNVSFTVEKGEFVSIIGPSGSGKSTLLHILAGIDRPTSGKVYVDGEDIYAKSEKELA
YYRRRKAGLIYQFYNLVPTLTVEENITLPCRLDKKKTDKETLDRLLDTLGMKERRSHLPSQLSGGQQQRCAIGRVLFTNP
ALMLADEPTGNLDSKSAAEVMELLGSANKQYGQTLIMITHNLELAKLADRMLIIKDGKLSEG

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
Cp1002_1464	YP_005681730.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	2e-29	43
CpC231_1466	YP_005683828.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	5e-31	41
cpfrc_01473	YP_003783873.1	hypothetical protein	Not tested	PiCp 5	Protein	5e-31	41
CpI19_1473	YP_005685914.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	5e-31	41

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
RUM_12400	YP_007829381.1	ABC-type antimicrobial peptide transport system, ATPase component	CP001581.1.gene798.p	Protein	1e-53	55
RUM_12400	YP_007829381.1	ABC-type antimicrobial peptide transport system, ATPase component	CP001581.1.gene598.p	Protein	1e-47	54
RUM_12400	YP_007829381.1	ABC-type antimicrobial peptide transport system, ATPase component	NC_012469.1.7686878.	Protein	1e-37	42
RUM_12400	YP_007829381.1	ABC-type antimicrobial peptide transport system, ATPase component	NC_008702.1.4606598.	Protein	9e-33	41
RUM_12400	YP_007829381.1	ABC-type antimicrobial peptide transport system, ATPase component	NC_012469.1.7685735.	Protein	2e-35	41