Gene Information

Name : CK3_11030 (CK3_11030)
Accession : YP_007823328.1
Strain : butyrate-producing bacterium SS3/4
Genome accession: NC_021035
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1108522 - 1109178 bp
Length : 657 bp
Strand : +
Note : -

DNA sequence : 
ATGAATGAGCTGATTACAGGCTTAAATGGAGGAAATGTTCCTGCGCTGGATATTATCATGCTGCTTACCTTTGCAGCATT
GCTTCCTTCCATTGTGGTTATGATGAGTTCCTTTATGCGTATTATAATCATACTTTCTTTTACGAGAAATGCAATGGGAG
TCCAGCAGACACCGCCTAATATGGTATTAACAGGCATGGCACTTTTTTTGTCGCTGTATATTATGAGTCCGGTTATAGGC
CAGATCAATACGGTTGCCTACGAGCCCTATAAAAATGGGGAGATCACACAGCAGGAGGCAGTAAGCCGCATGGCAGATCC
ACTGAAGCAATTCATGCTTCGCAATACAGAGAAGGATACGCTGGATCATTTTGTACAGATGTCAAAACAGGAAGTTAAGA
AAGATGTGAAAGAATATCCTCTTACTGTTGTTGTACCAGCTTTTATGACCAGCGAATTAAAAAAAGGGTTTCTTGCAGGA
TTTCTGATTTATCTTCCATTTCTGCTTATAGATATAGTGGTGTCTACCACCCTTATGTCCATGGGTATGGTAATGCTTCC
GCCAACTATGGTCTCTCTTCCCTTTAAGTTACTTTTATTTATTACAGTAAATGGCTGGGAACTTTTATTTTCCAGTCTGG
TACAAAGCTTCCGGTAG

Protein sequence : 
MNELITGLNGGNVPALDIIMLLTFAALLPSIVVMMSSFMRIIIILSFTRNAMGVQQTPPNMVLTGMALFLSLYIMSPVIG
QINTVAYEPYKNGEITQQEAVSRMADPLKQFMLRNTEKDTLDHFVQMSKQEVKKDVKEYPLTVVVPAFMTSELKKGFLAG
FLIYLPFLLIDIVVSTTLMSMGMVMLPPTMVSLPFKLLLFITVNGWELLFSSLVQSFR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 9e-30 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 9e-30 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 9e-30 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-32 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 5e-32 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 3e-32 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 5e-32 41
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 7e-27 41
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 4e-25 41
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 4e-25 41
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 5e-27 41
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 5e-31 41
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 3e-34 41
escR AAL57527.1 EscR Virulence LEE Protein 2e-34 41
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 3e-34 41
escR CAC81847.1 EscR protein Virulence LEE II Protein 2e-34 41
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 3e-34 41
escR CAI43889.1 EscR protein Virulence LEE Protein 2e-34 41
escR AAC31528.1 L0049 Virulence LEE Protein 2e-34 41
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 2e-34 41
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 4e-26 41
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 1e-33 41
escR AAC38369.1 EscR Virulence LEE Protein 2e-33 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 3e-26 41
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 3e-34 41
escR AAK26700.1 EscR Virulence LEE Protein 2e-34 41
unnamed AAL06354.1 EscR Virulence LEE Protein 1e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CK3_11030 YP_007823328.1 flagellar biosynthetic protein FliP VFG2494 Protein 2e-50 50
CK3_11030 YP_007823328.1 flagellar biosynthetic protein FliP VFG1259 Protein 1e-48 49
CK3_11030 YP_007823328.1 flagellar biosynthetic protein FliP VFG2016 Protein 6e-46 48
CK3_11030 YP_007823328.1 flagellar biosynthetic protein FliP VFG2338 Protein 8e-45 44
CK3_11030 YP_007823328.1 flagellar biosynthetic protein FliP VFG0044 Protein 3e-37 43
CK3_11030 YP_007823328.1 flagellar biosynthetic protein FliP VFG0394 Protein 8e-31 41
CK3_11030 YP_007823328.1 flagellar biosynthetic protein FliP VFG0827 Protein 1e-34 41
CK3_11030 YP_007823328.1 flagellar biosynthetic protein FliP VFG0715 Protein 8e-34 41