Gene Information

Name : RTO_10760 (RTO_10760)
Accession : YP_007786266.1
Strain : [Ruminococcus] torques L2-14
Genome accession: NC_021015
Putative virulence/resistance : Virulence
Product : ATP-dependent chaperone ClpB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1082507 - 1085092 bp
Length : 2586 bp
Strand : -
Note : -

DNA sequence :
ATGAATATCAATAAATTTACACAGAATTCATTACAGGCAGTTCAGAACTGTGAGAAGATTGCTGCGGATAACGGGAATCA
GGAACTGGCGCAGGAGCATTTGCTGTATGCGCTGCTGACACAGGATGACAGTCTGATTTTAAAATTATTTGAGAAGATGA
ACATTCAGGGCCAGCTCTTTATTAACAGTATCGAGCAGGCAATCGGCAAGAGACCAAAGGTACAGGGAGGTCAGGCTTAT
GTCGGTCAGGACTTGAATAATGTGCTGATCCATGCAGAAGATGAAGCAAAGCAGATGGGAGATGAGTATGTCTCTGTTGA
GCATCTGTTTCTTGCAATGCTGAAGTATGCAAGCCGTGAGTTGAAGCAGATTTTCCGTGAATATGGCATCAGCAGAGAGG
GTTTCCTCCATGCGCTGTCAACAGTAAGAGGAAATCAGAGAGTTACTTCTGACAATCCGGAAGCAACTTATGATACATTG
AATAAATACGGCCAGGATCTTGTTGAGAAAGCAAGAGATCAGAAACTGGATCCGGTCATCGGACGTGATGAAGAGATCCG
TAATGTGATTCGTATCCTGTCCCGTAAGACAAAGAATAACCCGGTGCTGATCGGTGAACCTGGTGTAGGTAAAACTGCGG
TTGTAGAAGGACTTGCACAGCGAATCGTCAGCGGAGATGTACCGGAAGGCCTGAAAGATAAGACAATCTTTTCGCTGGAT
ATGGGAGCACTGGTAGCAGGAGCGAAGTATCGTGGTGAATTCGAGGAACGTCTGAAAGCAGTTCTTGAAGAAGTGAAGAA
CAGTGACGGAAAGATCATTCTTTTTATCGATGAACTTCATACGATCGTCGGAGCAGGTAAAACAGACGGTGCGATGGATG
CAGGAAATATGCTTAAGCCTATGCTTGCCAGAGGTGAACTGCATTGTATCGGTGCAACAACACTGGATGAGTATCGTCAG
TATATTGAGAAGGATGCTGCATTGGAGCGTCGTTTCCAGCCGGTTCTGGTAGATGAGCCAACCGTTGAGGATGCAATCTC
TATCCTGAGAGGACTGAAAGAGAGATACGAAGTCTTCCATGGAGTTAAGATCACAGATAGTGCGCTTGTTGCGGCAGTTA
CACTTTCGAACAGATATATTTCTGACCGTTTCCTGCCGGATAAAGCAATCGATCTTGTTGACGAGGCGTGTGCATTGATC
AAAACAGAACTTGATTCTATGCCGACAGAGCTTGATGAGCTTCGCCGTCGTGTGATGCAGATGGAGATTGAAGAGTCTGC
ACTTAAGAAAGAGGAAGATCGCTTAAGTAAAGAGCGTCTGGAACATTTGCAGGAAGAACTGGCAGAACTGAAAGCACAGT
ATGCAAGTAAGAAAGTACAGTGGGAGAATGAGAAGAATTCTGTAGAGCATGTACAGAAGATCCGTGAGCAGATCGAGCAG
GTGAACAAGGAGATTCAGAAAGCCCAAAGAGAGTATGATCTGAATAAGGCAGCAGAGCTTCAGTATGGTCGCCTTCCACA
GCTGCAGAAACAGCTGGAAGAGGAAGAGGCAAAGGTAAAGGCAAAAGATCTTTCTCTTGTGCATGAATCCGTTACAGATG
ATGAGATCGCAAAGATCGTTTCCAGATGGACAGGTATTCCGGTTGCAAAACTGAACGAGAGCGAGAGAAACAAAACTCTT
CACCTTGCAGATGAACTGCATAAGCGTGTCATCGGTCAGGATGAAGGTGTAGAGCTTGTAACTGAAGCAATCATCCGTTC
CAAAGCAGGTATCAAAGATCCGACAAAACCGATCGGTTCCTTCCTGTTCCTTGGACCTACAGGTGTAGGTAAGACAGAGC
TTGCAAAGGCACTTGCCCAGAGCCTGTTTGATGATGAGAACAACATGGTTCGTATCGATATGAGTGAGTACATGGAGAAA
TATTCCGTGTCCAGACTGATCGGAGCTCCTCCGGGATATGTCGGATACGATGAAGGCGGACAGCTGACAGAAGCAGTCAG
AAGAAAACCATATTCTGTTGTACTTTTCGATGAGATCGAGAAAGCACATCCGGATGTCTTCAACGTATTGCTGCAGGTAC
TGGATGATGGACGAATCACAGATTCCCAAGGACGTACAGTTGACTTCAAGAATACAATCTTGATCATGACTTCCAACATT
GGTGCAAACTATCTGCTGGAAGGAATTAAGGACGATGGTTCGATCGATGAACAGAGTCAGGAGATGGTAATGGGTGATCT
GAAAGCACATTTCAGACCGGAATTCTTGAACCGTCTGGATGAGATCATCATGTTCAAACCATTGACAAAGACAAATGTAC
GTTCCATCATTGACCTTCTGGTTGCTGATGTGAATCGCCGTCTGGAAGAACGTGAACTGAGTGTTGAGCTGACAGATGCA
GCGAAAGACTTTGTTGTGGAAGGTGGATATGAGCCGATGTACGGTGCAAGACCACTGAAACGTTACTTGCAGAAGAATGT
AGAGACATTAGCTGCAAAACTGATCCTTGCAGGAGATGTGGGACGTGGAGACACGATCTTGATCGATGTAAAGGACGGTA
AACTGACAGCAGGTGTGAAGAAATAA

Protein sequence :
MNINKFTQNSLQAVQNCEKIAADNGNQELAQEHLLYALLTQDDSLILKLFEKMNIQGQLFINSIEQAIGKRPKVQGGQAY
VGQDLNNVLIHAEDEAKQMGDEYVSVEHLFLAMLKYASRELKQIFREYGISREGFLHALSTVRGNQRVTSDNPEATYDTL
NKYGQDLVEKARDQKLDPVIGRDEEIRNVIRILSRKTKNNPVLIGEPGVGKTAVVEGLAQRIVSGDVPEGLKDKTIFSLD
MGALVAGAKYRGEFEERLKAVLEEVKNSDGKIILFIDELHTIVGAGKTDGAMDAGNMLKPMLARGELHCIGATTLDEYRQ
YIEKDAALERRFQPVLVDEPTVEDAISILRGLKERYEVFHGVKITDSALVAAVTLSNRYISDRFLPDKAIDLVDEACALI
KTELDSMPTELDELRRRVMQMEIEESALKKEEDRLSKERLEHLQEELAELKAQYASKKVQWENEKNSVEHVQKIREQIEQ
VNKEIQKAQREYDLNKAAELQYGRLPQLQKQLEEEEAKVKAKDLSLVHESVTDDEIAKIVSRWTGIPVAKLNESERNKTL
HLADELHKRVIGQDEGVELVTEAIIRSKAGIKDPTKPIGSFLFLGPTGVGKTELAKALAQSLFDDENNMVRIDMSEYMEK
YSVSRLIGAPPGYVGYDEGGQLTEAVRRKPYSVVLFDEIEKAHPDVFNVLLQVLDDGRITDSQGRTVDFKNTILIMTSNI
GANYLLEGIKDDGSIDEQSQEMVMGDLKAHFRPEFLNRLDEIIMFKPLTKTNVRSIIDLLVADVNRRLEERELSVELTDA
AKDFVVEGGYEPMYGARPLKRYLQKNVETLAAKLILAGDVGRGDTILIDVKDGKLTAGVKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 6e-104 44
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 5e-103 41
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 7e-103 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RTO_10760 YP_007786266.1 ATP-dependent chaperone ClpB VFG2076 Protein 6e-117 44
RTO_10760 YP_007786266.1 ATP-dependent chaperone ClpB VFG2084 Protein 1e-112 41