Gene Information

Name : RTO_29840 (RTO_29840)
Accession : YP_007787902.1
Strain : [Ruminococcus] torques L2-14
Genome accession: NC_021015
Putative virulence/resistance : Resistance
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3070042 - 3070740 bp
Length : 699 bp
Strand : -
Note : -

DNA sequence :

ATGGAGCCACTCATTCGTGTTAAAAATATGTACAAGATCTACAACCCGGGAGAAAATGAAGTCCGCGCACTGGATGATGT
TTCTCTTGAGATCAACCAGGGGGAATTTATTGCCATTGTCGGACATTCCGGTTCTGGTAAATCTACATTTATGAATATGC
TCGGCTGTCTTGACACACCTGATTCCGGGGAATATTTTCTGGACGGAAAAGATGTTGCCAATCTCTCAGACAATGAACTG
TCTGATATCCGCAATCACAAGATCGGCTTCATCTTTCAGGGATTTAATTTGATTCCAAATTTGGATGCACTTGGAAATGT
AGAACTTCCACTGATTTACCGCGGACTTGGAAAGCAGCAGAGAAAAGAGATTGCCGGGGAAGCACTGTCGAAAGTTGGAC
TGGAAAACCGTATGGATCACAGACCGAACCAGCTTTCCGGTGGACAGCAACAGCGTGTCGCTGTAGCCAGAGCAATTGCC
GCACAGCCGCCGATCATCCTTGCCGATGAACCGACCGGTAACCTGGACAGTAAATCAACTATCGAGATCATGAATATCCT
CAAAGACCTTCATAAGTCTGGAAGAACAGTTATTATCATTACACATGATGATGAAATTGCTAATCAGGTTGATCGTGTTG
TCCGCATTATGGATGGAAAGATTGTGAGTGATAGTGTAAATCCGTCGCCTTGCTATTGA

Protein sequence :

MEPLIRVKNMYKIYNPGENEVRALDDVSLEINQGEFIAIVGHSGSGKSTFMNMLGCLDTPDSGEYFLDGKDVANLSDNEL
SDIRNHKIGFIFQGFNLIPNLDALGNVELPLIYRGLGKQQRKEIAGEALSKVGLENRMDHRPNQLSGGQQQRVAVARAIA
AQPPIILADEPTGNLDSKSTIEIMNILKDLHKSGRTVIIITHDDEIANQVDRVVRIMDGKIVSDSVNPSPCY

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
Cp1002_1464	YP_005681730.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	1e-24	42
CpI19_1473	YP_005685914.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	2e-25	42
CpC231_1466	YP_005683828.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	2e-25	42
cpfrc_01473	YP_003783873.1	hypothetical protein	Not tested	PiCp 5	Protein	2e-25	42

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
RTO_29840	YP_007787902.1	ABC-type antimicrobial peptide transport system, ATPase component	NC_012469.1.7686878.	Protein	2e-53	53
RTO_29840	YP_007787902.1	ABC-type antimicrobial peptide transport system, ATPase component	CP001581.1.gene798.p	Protein	6e-37	48
RTO_29840	YP_007787902.1	ABC-type antimicrobial peptide transport system, ATPase component	NC_008702.1.4606598.	Protein	9e-42	48
RTO_29840	YP_007787902.1	ABC-type antimicrobial peptide transport system, ATPase component	CP001581.1.gene598.p	Protein	5e-36	46
RTO_29840	YP_007787902.1	ABC-type antimicrobial peptide transport system, ATPase component	NC_012469.1.7686946.	Protein	4e-24	44
RTO_29840	YP_007787902.1	ABC-type antimicrobial peptide transport system, ATPase component	NC_012469.1.7685735.	Protein	6e-31	42