Gene Information

Name : RTO_12870 (RTO_12870)
Accession : YP_007786428.1
Strain : [Ruminococcus] torques L2-14
Genome accession: NC_021015
Putative virulence/resistance : Virulence
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1320287 - 1320952 bp
Length : 666 bp
Strand : +
Note : -

DNA sequence : 
ATGAGCATTTTGCAAACGACTGAACTGAAAAAATATTATGGCGCAGAGCCGAACATTACCAGAGCCTTGGATGGTGTGAC
CCTCTCCATAGAAAAGGGCGAATTTGTAGCCATCGTGGGAACCTCCGGCAGCGGTAAATCCACGCTGCTGAACATGATCG
GCGGGCTGGATGTGCCTACCTCCGGCCAGGTTGTAGTGGATGGCAAGGAGCTGTCCAAACTCAAAGACGAGGAACTGACC
GTTTTCCGCAGAAGAAAGATCGGCTTTATCTTCCAGAACTACAATCTGGTGCCGGTGCTGAATGTCTACGAAAACATTGT
GCTGCCTGTGGAGCTGGACGGAAACAAGGTAGACAAAAAGTTTATGAACGAAGTAGTGCAGATGCTGGGGCTGGAGGATA
AGCTGAACAATATGCCAAATAACCTCTCCGGCGGCCAGCAGCAGCGTGTAGCCATCGCCCGCGCTCTGGTATCGAAGCCT
GCTATCGTACTGGCTGATGAACCCACCGGCAATCTGGACAGCAAGACCAGTGCCGATGTGCTGGGGCTTCTGAAAACCAC
AAGCCAGAAATTCCACCAGACCCTCGTGATGATTACCCATAACAGTGAGATCGCCCAGCTTGCCGACCGCATTATTCGGA
TCGAGGATGGTAAGATTGTGCAGTAA

Protein sequence : 
MSILQTTELKKYYGAEPNITRALDGVTLSIEKGEFVAIVGTSGSGKSTLLNMIGGLDVPTSGQVVVDGKELSKLKDEELT
VFRRRKIGFIFQNYNLVPVLNVYENIVLPVELDGNKVDKKFMNEVVQMLGLEDKLNNMPNNLSGGQQQRVAIARALVSKP
AIVLADEPTGNLDSKTSADVLGLLKTTSQKFHQTLVMITHNSEIAQLADRIIRIEDGKIVQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-37 47
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-38 46
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-38 46
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-38 46
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 3e-28 43
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 8e-33 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RTO_12870 YP_007786428.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene598.p Protein 8e-84 78
RTO_12870 YP_007786428.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene798.p Protein 5e-62 56
RTO_12870 YP_007786428.1 ABC-type antimicrobial peptide transport system, ATPase component NC_012469.1.7686878. Protein 7e-38 44
RTO_12870 YP_007786428.1 ABC-type antimicrobial peptide transport system, ATPase component NC_012469.1.7685735. Protein 2e-36 42
RTO_12870 YP_007786428.1 ABC-type antimicrobial peptide transport system, ATPase component NC_008702.1.4606598. Protein 4e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RTO_12870 YP_007786428.1 ABC-type antimicrobial peptide transport system, ATPase component VFG0869 Protein 1e-20 42