Gene Information

Name : CK1_40030 (CK1_40030)
Accession : YP_007785321.1
Strain : Ruminococcus sp. SR1/5
Genome accession: NC_021014
Putative virulence/resistance : Resistance
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3535092 - 3535799 bp
Length : 708 bp
Strand : -
Note : -

DNA sequence :
ATGGAAGATGCATTGGTACGGGTAGTAGATCTGTGCAAGGTTTACAATCCCGGAGAAAATGAGGTGCGGGCGCTGGATCA
TGTGAACCTGGAGATCTATAAGGGGGAATTTGTGGCTATTATCGGACAGTCCGGTTCCGGAAAATCCACCTTTATGAACA
TGCTGGGCTGTCTGGATGTCCCCACCTCCGGGAAATATTATCTGAATGGAACAGATGTATCCACAATGAAGGATAACGAT
CTCTCGGTGGTACGAAATAAGGAGATTGGTTTTATCTTTCAGGGCTTTAATCTGATTGCAAATCTTACGGCTCTGGAAAA
CGTGGAGCTTCCTCTGATCTACCGCGGGATTGACCGGAAAACAAGAAGAAAGCTTGCTGTGGAATCTCTTAAAAAAGTCG
GACTTGAGAAACGTATGGATCATAAGCCGAATGAAATGTCAGGGGGACAGCAGCAGCGTGTGGCTATTGCCAGAGCTATC
GCAGCCAGGCCGCCGGTGATCCTGGCGGACGAACCAACGGGAAATCTGGACTCTGCATCCAGCAGGGAAATTATGGAGAT
CCTGAAGGGAATGCACAGATCAGGAGAAACCTTGATCCTGATCACCCATGATAATGGAATCGCGGCTCAGGCCAGACGTG
TGGTCCGGATCATGGATGGAAAAATTGAATCAGATACGATCAACGAGGAATTCGTCGAGGAGGCTTAA

Protein sequence :
MEDALVRVVDLCKVYNPGENEVRALDHVNLEIYKGEFVAIIGQSGSGKSTFMNMLGCLDVPTSGKYYLNGTDVSTMKDND
LSVVRNKEIGFIFQGFNLIANLTALENVELPLIYRGIDRKTRRKLAVESLKKVGLEKRMDHKPNEMSGGQQQRVAIARAI
AARPPVILADEPTGNLDSASSREIMEILKGMHRSGETLILITHDNGIAAQARRVVRIMDGKIESDTINEEFVEEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-26 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-22 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-23 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-23 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-23 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CK1_40030 YP_007785321.1 ABC-type antimicrobial peptide transport system, ATPase component NC_012469.1.7686878. Protein 1e-48 52
CK1_40030 YP_007785321.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene798.p Protein 8e-37 47
CK1_40030 YP_007785321.1 ABC-type antimicrobial peptide transport system, ATPase component NC_008702.1.4606598. Protein 1e-37 47
CK1_40030 YP_007785321.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene598.p Protein 5e-33 46
CK1_40030 YP_007785321.1 ABC-type antimicrobial peptide transport system, ATPase component NC_012469.1.7686946. Protein 7e-22 41