Gene Information

Name : CK1_36980 (CK1_36980)
Accession : YP_007785073.1
Strain : Ruminococcus sp. SR1/5
Genome accession: NC_021014
Putative virulence/resistance : Virulence
Product : ATP-dependent chaperone ClpB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3253891 - 3256473 bp
Length : 2583 bp
Strand : -
Note : -

DNA sequence :
ATGAATATCAGTAAATTTACACAGAAATCCGTACAGGCTGTCCAGGATCTTGAAAAGATTGCTTATGAATATGGCAATCA
GGAGATCGAAGAGGAACACCTTCTGTATGCCTTGCTGACACAGGAGGATAGCCTGATCCTCAAGCTGATCGAGAAGATGG
AAATCCAGAAGGAATATTTTATTGACACAGTTAAGAGGGCACTGGATGCCAGAGTTAAGGTTTCCGGTGGAGAGCTTCGA
TTTGGTCAGTATCTGAACAAGGCACTGGTCAGTGCAGAGGACGAAGCGAAGGCTATGGGAGATGAGTATGTATCGGTTGA
GCATCTGTTTCTTTCCATGCTGAAGAATCCAAGCCCGAGCATGAAGAAGCTATTCAATGAATTCGGAATCACCAGAGAGC
GTTTTCTTCAGGCATTATCTACAGTCAGGGGAAACCAGAGAGTTGTCAGTGACAACCCGGAGGCAACCTATGATACCCTG
AATAAATACGGTGAGGATCTTGTGGAGAAGGCGAAGAATCAGAAGCTTGATCCGGTGATCGGCCGTGATATGGAGATCCG
GAATATTATCCGTATCCTTTCCCGTAAGACCAAGAACAACCCGGTTCTCATCGGTGAGCCTGGCGTTGGTAAAACAGCAG
CCATCGAGGGACTGGCACAGCGTATTGTGGCAGGAGATGTACCGGAAGGTCTTAAGAATAAGAAGATTTTTGCCCTGGAT
ATGGGTGCGCTGGTTGCAGGTGCCAAGTATCGTGGCGAGTTTGAGGAACGTCTGAAAGCGGTACTTGAGGAAGTGAAAAA
GAGCGAAGGACAGATCATTCTGTTTATCGATGAGCTTCATCTGATCGTGGGTGCAGGTAAGACAGACGGCGCCATGGACG
CAGGAAACATGCTGAAGCCTATGCTTGCCAGAGGTGAGCTGCACTGTATCGGTGCAACAACTCTGGATGAGTACCGCCAG
TATATTGAGAAGGATGCTGCACTTGCCCGTCGTTTCCAGCCGGTTATGGTAAATGAGCCGACAGTGGAAGATACCATTTC
CATTCTCCGTGGTCTGAAGGAAAGATATGAGGTATTCCACGGTGTTAAGATCACAGACAGTGCATTGGTTGCAGCTGCCA
CACTTTCACACAGATACATTACAGACCGTTTTCTCCCGGATAAGGCAATCGACCTTGTTGATGAAGCCTGTGCGCTGATC
AAGACGGAGCTGGATTCCATGCCGACAGAGCTGGATGAGCAGAGACGTAAGATCATGCAGCTGGAGATTGAAGAGTCTGC
CCTGAAAAAAGAAACTGACAACTTAAGTAAAGAGCGTCTGGCTGATCTGCAGAAAGAACTTGCAGAGCTGAGAGATACTT
TTAATACCCAGAAAGCTCAGTGGGATAATGAGAAGCATTCCGTAGAGAAGCTTCAGAAATTACGTGAGCAGATCGAGGAT
ATCAATAAACAGATCCAGAAAGCAAAACAGAATTACGATCTGGAGAAAGCAGCAGAGCTGCAGTATGGCGAGCTGCCGAA
GCTTCAGCAGCAGCTGGAAGTTGAGGAAAAGCAGGTTAAGGAGAGTGACAGAAGCCTGGTACATGAGGCTGTCACAGATG
ATGAGATTGCTCGTATCATTTCCAGATGGACCGGTATTCCGGTAACCAAGCTGACAGAAGGTGAGAGAACCAAGCTGCTG
GGCCTTGAGGATGAGCTGCACAAACGTGTAGTAGGACAGGATGAGGGTGTTCGTCTTGTAACAGATGCGATCCTTCGTTC
CAAAGCCGGAATCAAGGATCCCACAAAGCCAATCGGTTCATTCCTGTTCCTCGGACCAACCGGTGTTGGTAAAACAGAGC
TTGCCAAGACTCTGGCTGCCACACTGTTTGACGATGAGCAGAATATGGTCCGTATCGATATGAGTGAGTACATGGAGAAA
TATTCCGTGTCCCGTCTGATCGGAGCGCCTCCAGGATATGTCGGATATGAGGAAGGCGGACAGCTGACAGAGGCCGTTCG
AAGAAAACCGTACAGTGTTGTTCTTTTTGATGAGATCGAGAAGGCTCACCCGGATGTATTCAATGTACTTCTGCAGGTAC
TGGACGATGGACGTATCACGGATTCACAGGGACGTACGGTTGATTTTAAGAATACGATCCTGATCATGACTTCCAACATT
GGTTCTCCGTACCTTCTTGACGGTATCGACGAGAAGGGAGATATCAAACCGGAGGCACAGGAACAGGTTATGAATGATCT
TCGTGGTCATTTCCGTCCGGAATTTCTGAACCGTCTGGATGAGATCATCATGTTCAAGCCGCTGACCAAGGATAATGTAG
GTAAGATCGTAGATCTTATGGTCAAAGAGCTCAGCGACCGTCTGGCTGACCAGGAGCTTTCTCTGGAGCTTACAGATGCT
GCCAAACAGATGGTAGTGGATAACGGTTATGATCCGGTTTACGGCGCACGTCCTCTGAAGCGTTATCTCCAGAATTATGT
GGAGACACTGACAGCCAAGAAGATCCTTTCCGGTGATGTACATGCCGGAGATACCATTGTGCTGGATGTGAAGGACGGAG
CGTTTACCGTCAGCACGAAGTAA

Protein sequence :
MNISKFTQKSVQAVQDLEKIAYEYGNQEIEEEHLLYALLTQEDSLILKLIEKMEIQKEYFIDTVKRALDARVKVSGGELR
FGQYLNKALVSAEDEAKAMGDEYVSVEHLFLSMLKNPSPSMKKLFNEFGITRERFLQALSTVRGNQRVVSDNPEATYDTL
NKYGEDLVEKAKNQKLDPVIGRDMEIRNIIRILSRKTKNNPVLIGEPGVGKTAAIEGLAQRIVAGDVPEGLKNKKIFALD
MGALVAGAKYRGEFEERLKAVLEEVKKSEGQIILFIDELHLIVGAGKTDGAMDAGNMLKPMLARGELHCIGATTLDEYRQ
YIEKDAALARRFQPVMVNEPTVEDTISILRGLKERYEVFHGVKITDSALVAAATLSHRYITDRFLPDKAIDLVDEACALI
KTELDSMPTELDEQRRKIMQLEIEESALKKETDNLSKERLADLQKELAELRDTFNTQKAQWDNEKHSVEKLQKLREQIED
INKQIQKAKQNYDLEKAAELQYGELPKLQQQLEVEEKQVKESDRSLVHEAVTDDEIARIISRWTGIPVTKLTEGERTKLL
GLEDELHKRVVGQDEGVRLVTDAILRSKAGIKDPTKPIGSFLFLGPTGVGKTELAKTLAATLFDDEQNMVRIDMSEYMEK
YSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEIEKAHPDVFNVLLQVLDDGRITDSQGRTVDFKNTILIMTSNI
GSPYLLDGIDEKGDIKPEAQEQVMNDLRGHFRPEFLNRLDEIIMFKPLTKDNVGKIVDLMVKELSDRLADQELSLELTDA
AKQMVVDNGYDPVYGARPLKRYLQNYVETLTAKKILSGDVHAGDTIVLDVKDGAFTVSTK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 2e-103 42
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 2e-103 42
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 3e-105 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CK1_36980 YP_007785073.1 ATP-dependent chaperone ClpB VFG0079 Protein 0.0 46
CK1_36980 YP_007785073.1 ATP-dependent chaperone ClpB VFG2076 Protein 4e-119 42
CK1_36980 YP_007785073.1 ATP-dependent chaperone ClpB VFG2084 Protein 2e-110 41