Gene Information

Name : RBR_06820 (RBR_06820)
Accession : YP_007780820.1
Strain : Ruminococcus bromii L2-63
Genome accession: NC_021013
Putative virulence/resistance : Resistance
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : 3.6.3.-
Position : 729587 - 730258 bp
Length : 672 bp
Strand : -
Note : -

DNA sequence : 
ATGGAAATTCTGAAAGTTGAAAATCTTACAAAAACCTACGGAAGCGGTGAAAACCTTGTCCATGCGGTTGACGATGTTTC
GTTCTCGGTTGAAAAGGGCGAATTTGTTGCCATTGTCGGTGCAAGCGGCAGCGGCAAGTCAACTCTTCTTCATCTTATCG
GCGGTGTTGACCGTCCCACAAGCGGAAAAATTTTTGTTGACGGCAACGATATAAGCAAAATGAATGATGACAAGCTTGCC
GTATTCCGCCGCAGACAGGTGGGCATTGTCTATCAGTTCTACAATCTTATCCCGATTCTGACTGTTGAAGAAAACATCAC
GCTCCCCTGTGACCTTGACGGCAGAGGTGTTGACAGAGAAAGACTTGAGATGATTCTTGATTCGTTCGGACTGCGTGCAA
GAAGAAAACACCTTCCAAACCAGCTTTCGGGCGGTCAGCAACAAAGAACATCTATTGCCAGAGCGCTCATTAACAATCCG
TCTCTTGTGCTTGCCGATGAACCGACAGGCAACCTTGATTCAAAGTCAAGCGAAGAGGTTATGAGTATGCTCAAAATGTG
CAATCAGAGTTACGGACATACTGTTATAATGATTACGCACAACCTCGACATTGCAAAACAGGCAGACAGAATCATAACAA
TCAGCGACGGCAAAATTGTTGAGGAGGCTTGA

Protein sequence : 
MEILKVENLTKTYGSGENLVHAVDDVSFSVEKGEFVAIVGASGSGKSTLLHLIGGVDRPTSGKIFVDGNDISKMNDDKLA
VFRRRQVGIVYQFYNLIPILTVEENITLPCDLDGRGVDRERLEMILDSFGLRARRKHLPNQLSGGQQQRTSIARALINNP
SLVLADEPTGNLDSKSSEEVMSMLKMCNQSYGHTVIMITHNLDIAKQADRIITISDGKIVEEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-34 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-35 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-35 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-35 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RBR_06820 YP_007780820.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene798.p Protein 2e-61 58
RBR_06820 YP_007780820.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene598.p Protein 2e-60 55
RBR_06820 YP_007780820.1 ABC-type antimicrobial peptide transport system, ATPase component NC_012469.1.7685735. Protein 9e-38 44
RBR_06820 YP_007780820.1 ABC-type antimicrobial peptide transport system, ATPase component NC_012469.1.7686878. Protein 8e-39 42
RBR_06820 YP_007780820.1 ABC-type antimicrobial peptide transport system, ATPase component NC_008702.1.4606598. Protein 2e-36 42