Gene Information

Name : RBR_04070 (RBR_04070)
Accession : YP_007780591.1
Strain : Ruminococcus bromii L2-63
Genome accession: NC_021013
Putative virulence/resistance : Resistance
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 419791 - 420483 bp
Length : 693 bp
Strand : -
Note : -

DNA sequence :
ATGATTGAAGTTAAAAATTTGACAAAATATTACGGCAAAGGCGAAAGCAGATTTAAGGTGTTGGATAACATAAATTTAAA
AATTGCACAAGGGGATTTTGCCGTAATTCTCGGCGCTTCGGGTTCGGGAAAGTCAACATTACTGAATGTTCTTTCGGGAC
TTGAAAAAGCCGACAGCGGAGAAGTTTGTTTGGACGGAAAAGATATTTGCAGTATGAGTGAAAGCGAACGCACAAAATTT
CGCAGAGATAATGTAGGCTTTATTTTTCAGCAGTACTATCTTTTGCCGAATATGAATGTCGATAAAAATGTCCGTATGGG
TGCAGATTTGGCGTCAAACAGCGATTACAGAAAAATTATAAGTGCCGTCGGACTTGATGACAAAGTTAAAAAATATCCCG
GAGAACTTTCGGGCGGAGAGCAACAGCGAGTGGCAATTGCCAGAGCGCTTGCCAAAAAGCCTACCGTGTTGTTCCTTGAT
GAGCCGACAGGTGCGCTTGATGAAAAAACAGGCAGACAGGTGCTTGATGTGATTACAAAATTGCAGTCGGAACAGGGATT
TACGATGATTATGGTAACGCATAACATTAATATTGCCGAAATGGCGAATACGGTGATTAAGGTGAGTGACGGAAAAATTG
CCGAAGTGTATAAAAATGATGTGCGTAAATCTGCATTTGAAATAGGTTGGTGA

Protein sequence :
MIEVKNLTKYYGKGESRFKVLDNINLKIAQGDFAVILGASGSGKSTLLNVLSGLEKADSGEVCLDGKDICSMSESERTKF
RRDNVGFIFQQYYLLPNMNVDKNVRMGADLASNSDYRKIISAVGLDDKVKKYPGELSGGEQQRVAIARALAKKPTVLFLD
EPTGALDEKTGRQVLDVITKLQSEQGFTMIMVTHNINIAEMANTVIKVSDGKIAEVYKNDVRKSAFEIGW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-39 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-41 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 8e-41 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-41 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RBR_04070 YP_007780591.1 ABC-type antimicrobial peptide transport system, ATPase component NC_012469.1.7686878. Protein 1e-38 43
RBR_04070 YP_007780591.1 ABC-type antimicrobial peptide transport system, ATPase component NC_012469.1.7685735. Protein 7e-40 43
RBR_04070 YP_007780591.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene598.p Protein 8e-43 42
RBR_04070 YP_007780591.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene798.p Protein 4e-39 41