Gene Information

Name : RBR_18980 (RBR_18980)
Accession : YP_007781838.1
Strain : Ruminococcus bromii L2-63
Genome accession: NC_021013
Putative virulence/resistance : Virulence
Product : ATPases with chaperone activity, ATP-binding subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1982278 - 1984620 bp
Length : 2343 bp
Strand : -
Note : -

DNA sequence :
ATGCTTTGTACAAGATGCGGAAAACGGCCTGCGGTTGTTTTCGTTTCAAATAATAATTCCAAAGACGCCCCAACGGCAGG
TTATTGCCTTACATGTGCAAAAGAGCTTGGAATCAAGCCGGTTGAGGATCTTATCAGCAAAATGGGTATCTCGGACGAGG
ACCTTGAAAATGTTCAGGATCAGATGAATACCCTCATGAACAGTATGGGTGACGGCGATATGTCGCAGCTTATGGAACAG
CTTGGTGCGGATAACCTTGCCGAGCAGATGGGCGATTTTGCTAAAGACGGTGACGGCAGCGAGGATGATGACTTCTCTCA
CGGTGCACCTGCATTCCCTGCATTTTTCAACAGTATGTTCGGCGGACAGAACAACAATGCGACAAATCAGGATAATAATA
ATAAAAAGGGCAAAAAAGAGAAAAAAGAAAAGAACAGAAAGCACATCAATCTTTACTGTGAAGACCTCACACGCAAGGCG
AGAGAGGGCAAAATCGATCGCATTGTCGGCAGAGACAGCGAGATTGAGCGTGTAATTCAGATTCTTTCAAGAAGAACAAA
GAACAATCCTTGCCTTATCGGTGAACCCGGTGTAGGTAAAACCGCTATTGCAGAGGGGCTTGCTCTCCGCATTGCCGCAG
GAAATGTTCCTCAAAGACTTAAAAACAAGGAAATTCAGCTTCTTGACCTCACCTCACTTGTTGCAGGTACTCAGTTCAGA
GGTCAGTTCGAAAGCAGAATCAAAGGACTTGTTTCCGAAATCAAGGAGAACGGCAACATAATTCTCTTTATTGATGAGGT
TCACAGCCTTGTCGGCACAGGTGACAACGAGGGTACAATGAATGCCGCAAATATTCTCAAACCGGCTCTTTCAAGGGGCG
AGGTTCAGGTCATCGGTGCTACAACATTCAACGAATACAGAAAATATATCGAAAAGGATTCTGCTCTTGAAAGAAGATTT
CAGCCCGTAAAGGTCGGCGAGCCTACAATTGCTCAGTCAATTGATGTTATCGCAGGCGTAAAAGGCTATTATGAGGCACA
TCACCGTGTAATTGTTGACGATGACATCGTTCGCAAGACGGTTGTCCTTTCCGAAAGATACATAACAGACCGTTTTCTTC
CCGACAAAGCAATCGATCTTCTTGATGAAAGCTGTGCCTGTGCTGCTCTCCGCAATAAAAACATGGAGCGTCACGATAAG
CTTGAGGACGAAAGACAGAAGCTTCTTGTCAGAAAGGACGCTCTTACAAATGCCGATGAGGTAAACTATGAACAGCTTGC
CGAGGTCAACACAAGCCTTGCAAGAATTGACAGCGACCTTAAAGAAATTGATCCTGAAACTCTCGTTTCAAAGGTTACAG
AGGAGGATATCGCCAAGGTAATCGAACTCTGGACAGGCATCCCCGCATCAAGAATCAAGGAAAACGAGCTTTCAAAGCTT
GCCGACCTTGAGAACGAGCTTAAAAAGAAAATTATCGGTCAAGACGAGGCTGTAAAGGCTCTTGCATCTGCAATCAGAAG
AAGCAGAGTTCAGATTTCACCTCGCCGCAGACCTGCATCGTTCATCTTTGTAGGTCCTACAGGTGTCGGTAAAACAGAGC
TTGTAAAGGTTCTCAGCAAGGAACTTTTCGATACTCCCGAAACTCTCATCAGACTTGATATGAGTGAATTTATGGAGAAA
CATTCGGTTTCTAAAATTATCGGTTCACCGCCCGGATATGTCGGTTACGATGAGGCAGGACAGGTAACGGAGAAAGTTCG
CCGCAGACCTTATTCGGTTCTCCTCTTTGATGAAATCGAAAAGGCTCATCCCGATGTTCTCAATATTTTGCTCCAAATTC
TTGACGAGGGCAGAGTTACAGACGCTCACGGCAGAACAGTAAACTTTGAAAATACTGTTATCATTATGACATCAAATGCC
GGTTCTGCATCAAAGGACAGCGCATTAGGCTTTGGCAAGACTGAAGAAGATGCCTCAAAAGAAAAGGTTATGAAGGCACT
TTCCGAGTTCCTCCGTCCTGAATTTATCGCAAGAGTTGATGAGGTTATCGTATTCAACAGCCTTAAAAAGGACGATTTTG
TTAAGATTGCAGACCTTATGCTCTCTGAGTATGTACCGACTCTTGAGGAAAAGCACATCAAATTCACATTTGACGAAAAG
GTTTGTCAGCTCCTTGCAGAAAAGTCATGCAACGGTGCAAGCGGTGCTCGTGACCTCAGAAACACAATTCGCAGAGAGGT
TGAGGAGAAAATTGCAAACGCAATGATTGAGGCAGGTGCAGGCGGTGTTACTGCAATGCACCTTACAGCCGAAAACGGTG
AGCCTGTTCTTCAGTCAATCTGA

Protein sequence :
MLCTRCGKRPAVVFVSNNNSKDAPTAGYCLTCAKELGIKPVEDLISKMGISDEDLENVQDQMNTLMNSMGDGDMSQLMEQ
LGADNLAEQMGDFAKDGDGSEDDDFSHGAPAFPAFFNSMFGGQNNNATNQDNNNKKGKKEKKEKNRKHINLYCEDLTRKA
REGKIDRIVGRDSEIERVIQILSRRTKNNPCLIGEPGVGKTAIAEGLALRIAAGNVPQRLKNKEIQLLDLTSLVAGTQFR
GQFESRIKGLVSEIKENGNIILFIDEVHSLVGTGDNEGTMNAANILKPALSRGEVQVIGATTFNEYRKYIEKDSALERRF
QPVKVGEPTIAQSIDVIAGVKGYYEAHHRVIVDDDIVRKTVVLSERYITDRFLPDKAIDLLDESCACAALRNKNMERHDK
LEDERQKLLVRKDALTNADEVNYEQLAEVNTSLARIDSDLKEIDPETLVSKVTEEDIAKVIELWTGIPASRIKENELSKL
ADLENELKKKIIGQDEAVKALASAIRRSRVQISPRRRPASFIFVGPTGVGKTELVKVLSKELFDTPETLIRLDMSEFMEK
HSVSKIIGSPPGYVGYDEAGQVTEKVRRRPYSVLLFDEIEKAHPDVLNILLQILDEGRVTDAHGRTVNFENTVIIMTSNA
GSASKDSALGFGKTEEDASKEKVMKALSEFLRPEFIARVDEVIVFNSLKKDDFVKIADLMLSEYVPTLEEKHIKFTFDEK
VCQLLAEKSCNGASGARDLRNTIRREVEEKIANAMIEAGAGGVTAMHLTAENGEPVLQSI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 1e-147 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RBR_18980 YP_007781838.1 ATPases with chaperone activity, ATP-binding subunit VFG0080 Protein 1e-143 51
RBR_18980 YP_007781838.1 ATPases with chaperone activity, ATP-binding subunit VFG0079 Protein 3e-144 48