Gene Information

Name : RO1_05020 (RO1_05020)
Accession : YP_007777035.1
Strain : Roseburia intestinalis XB6B4
Genome accession: NC_021012
Putative virulence/resistance : Resistance
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 484726 - 485403 bp
Length : 678 bp
Strand : +
Note : -

DNA sequence : 
ATGGAAAATATCGTTAAGACATATTATTTGGGAAAACCAAATGAACTTGAAATTTTACATGGAATCAACCTTACCGTAAA
TAAAGGGGAATTTGTTTCCATCGTCGGTGAATCCGGTTCCGGTAAGAGTACACTTATGAATATTATAGGAGTCCTCGACC
GCCAGACACAGGGAGATTATTATCTGGAGGGACAGGATGTCAATGGAATGTCGGATGAAGTACGGAGTGCGATCAGAAAC
CGCAGGATTGGTTTTGTATTTCAGAACTTTAATCTCCTTCCGAGAGCCAATGCATTAAAAAATGTTATGGTTCCATTACT
ATATGGAGAAGAACATTCCAAAAACGGAAAAGAACATGCCATGGAAATGCTTAAAATGGTGGGAATGGAAGAACGTGCGG
ATCACAGACCGAATGAGCTTTCCGGTGGACAGAAACAGCGTGTTGCAATTGCAAGGGCAATGATCAATGATCCGGCGATC
ATTCTTGCGGATGAGCCGACCGGAGCACTTGATTCTAAGACAGGTCATATGGTCATGGACTTATTCCATAAGCTTCATGA
GGAGCAGGGGAAAACAATTGTCCTGATCACACATTCCCAGGAGCTTGCACAGGAAACAGAGCGTATCGTTACTCTGTTAG
ATGGTCAGATCGTGGCGGATAACGGAGGTGAACATTAA

Protein sequence : 
MENIVKTYYLGKPNELEILHGINLTVNKGEFVSIVGESGSGKSTLMNIIGVLDRQTQGDYYLEGQDVNGMSDEVRSAIRN
RRIGFVFQNFNLLPRANALKNVMVPLLYGEEHSKNGKEHAMEMLKMVGMEERADHRPNELSGGQKQRVAIARAMINDPAI
ILADEPTGALDSKTGHMVMDLFHKLHEEQGKTIVLITHSQELAQETERIVTLLDGQIVADNGGEH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-31 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-31 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 7e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RO1_05020 YP_007777035.1 ABC-type antimicrobial peptide transport system, ATPase component NC_012469.1.7686878. Protein 6e-52 54
RO1_05020 YP_007777035.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene798.p Protein 1e-38 46
RO1_05020 YP_007777035.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene598.p Protein 7e-39 45
RO1_05020 YP_007777035.1 ABC-type antimicrobial peptide transport system, ATPase component NC_008702.1.4606598. Protein 2e-39 44