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Name : RO1_42990 (RO1_42990) Accession : YP_007780232.1 Strain : Roseburia intestinalis XB6B4 Genome accession: NC_021012 Putative virulence/resistance : Unknown Product : Type IV secretory pathway, VirD4 components Function : - COG functional category : - COG ID : - EC number : - Position : 4252827 - 4254620 bp Length : 1794 bp Strand : + Note : - DNA sequence : ATGAGGAACGATAACGACCAAAAGACGGGCTTAATCCTTTCTATCTGCGGCATCGTTCCTGTTGTATGGCTTTCACTGCT GACAGCACCCTATGTCAGCGGCGGCATCGTGGAGATAGTCAGCGGCTTATCCGTAGCAGTAAATAACCCGTTTTCCATAA CGGTGTGTGAGGACAGCGTAAAGACTGTCCTTATTTTTTTGCTTGCCTACGCTATGGGCATCGGCATCTATTTCTCCACA CGCAGGAACTACCGCAGGCGGGAGGAACACGGCTCGGCAAAATGGGGCAATACAGGTACTCTCAACAAGAAGTACCGAGA TAAAAACCCGTTCGAGAACAAACTGCTCACGCAAAATGTGCGTATCGGCTTGGACGGAAAGAAGCACCGCCGAAACTTGA ATATTTTGGTCTGCGGCGGTTCTGGTGCAGGTAAGACAAGGTTTTTTTGCAAGCCCAACGCTATGCAATGCAACACCTCT TTCGTGGTGCTTGACCCAAAGGGCGAAATCGTCCGTGACATTGGCGGTCTGCTCGAAAAGAAAGGTTATGAGGTGCGTGT CCTTGACCTTATCAATATGCACCGCAGCCATTGTTACAACCCCTTTGTGTATCTTCGGAACGACAACGATGTGCAAAGGC TTGTGACCAATCTCTTTAAGGCGACCACCCCGAAAGGAAGCCAGTCGCAAGACCCGTTCTGGGATACGGCGGCGAGTATG CTGCTTCTGGCATTGGTATTCTATCTCAAATATGAAGCACCGCCAGAGGAACAAAACTTCCCGATGGTTATGGAGCTTTT ACGGGCAGGCGAAGTGCGTGAGGACGATGACAGCTATATAAGCCCTCTTGACGAACTCTTTGACCGTCTGGAGATGGTAA ACCCAGAGCATATCGCCCTCAAGTATTACAGGGATTATCATTCAGGCTCGGCTAAGACCTTAAAGAGTATCCAGATAACC CTTGCCGCAAGGCTTGAAAAATTCAATCTGGAGAGCCTTGCAGGGCTTACTGCCACCGATGAGCTTGACCTGCCAAGTCT GGGGGAAAAGAAAGTCGCTTTATTCGCCCTGATACCAGACAACGATACGAGCTTTAACTTTCTTGTGTCGATTTTATACA CGCAGCTCTTTCAGCAATTATTTTATCTGGCAGACCACAAGTACGGCGGCAGCCTGCCCGTGCATTGCCATTTTATTATG GACGAGTTTGCCAATGTTTCCCTGCCAGACGATTTTGACAAGATACTGTCGGTTATGCGTTCCCGTGGCGTGTCGGTCAG TATCATCCTGCAAAATCTGGCACAGCTCAAAGCCCTGTTTGAAAAGCAATGGGAAAGCATCGTGGGCAACTGCGATGAGT TTTTGTATCTGGGCGGCAACGAGCAAAGCACCCATAAGTATGTGTCCGAGCTTTTAGGTAAGGAAACCATTGATACCAAC ACCTACGGGAAAAGCTCTGGACGAAGTGGGAACTATTCGACCAACTACCAGATGTCAGGGCGTGAGCTGATGACCCCAGA TGAAGTGCGTATGCTTGATAACCGCTACGCACTTCTTTTTGTGCGTGGCGAGCGACCCGTTATGGATTTTAAGTATGACA TCTTAAAGCACCCCAATGTAAAACTGACTGCTGACGGAGGTCAGCCGCCCTATGTTCACGGCGAGCCGACACAGGCGGTT GCGACCCTTGTGTTTGACAGCGAAATACCTGATAACGCCGTAAGCGTTATGCCTGTCAGCACTTCCTATGAACTTCTGTC CGATGAGGACTTAGAAGAAATATTCAACATCTAA Protein sequence : MRNDNDQKTGLILSICGIVPVVWLSLLTAPYVSGGIVEIVSGLSVAVNNPFSITVCEDSVKTVLIFLLAYAMGIGIYFST RRNYRRREEHGSAKWGNTGTLNKKYRDKNPFENKLLTQNVRIGLDGKKHRRNLNILVCGGSGAGKTRFFCKPNAMQCNTS FVVLDPKGEIVRDIGGLLEKKGYEVRVLDLINMHRSHCYNPFVYLRNDNDVQRLVTNLFKATTPKGSQSQDPFWDTAASM LLLALVFYLKYEAPPEEQNFPMVMELLRAGEVREDDDSYISPLDELFDRLEMVNPEHIALKYYRDYHSGSAKTLKSIQIT LAARLEKFNLESLAGLTATDELDLPSLGEKKVALFALIPDNDTSFNFLVSILYTQLFQQLFYLADHKYGGSLPVHCHFIM DEFANVSLPDDFDKILSVMRSRGVSVSIILQNLAQLKALFEKQWESIVGNCDEFLYLGGNEQSTHKYVSELLGKETIDTN TYGKSSGRSGNYSTNYQMSGRELMTPDEVRMLDNRYALLFVRGERPVMDFKYDILKHPNVKLTADGGQPPYVHGEPTQAV ATLVFDSEIPDNAVSVMPVSTSYELLSDEDLEEIFNI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| EF2328 | NP_815983.1 | TraG family protein | Not tested | Not named | Protein | 1e-76 | 42 |
