Gene Information

Name : RO1_35310 (RO1_35310)
Accession : YP_007779579.1
Strain : Roseburia intestinalis XB6B4
Genome accession: NC_021012
Putative virulence/resistance : Virulence
Product : Sugar transferases involved in lipopolysaccharide synthesis
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3500873 - 3501481 bp
Length : 609 bp
Strand : +
Note : -

DNA sequence : 
ATGACAGGATACCGTTATATAAAACGAATCATAGATATCTTACTCAGCGGGCTTGCGATTATTATATTGTCCCCGCTGCT
TTTGATCTTATGCATTGCGATCAAATTAGATTCACCGGGACCAATCTTCTTTACACAAAAGAGAGTCGGCATCCACAAGA
CATATTTCCAGATTTATAAATTCCGGACCATGCGCACCGATACACCGAAAGATATGCCGACACATATGCTGGCAAATCCG
GAACAGTACATTACAAAAACCGGCAGATTTCTTCGTAAGACCAGCCTCGATGAGCTGCCACAGATCTTTAATATTTTTAA
GGGGGATATGAGTATCGTAGGTCCTCGCCCGGCACTCTGGAATCAGGATGACCTTGTCGCAGAGCGTGACAAATACGGTG
CAAATGATGTGACACCGGGATTAACCGGTTGGGCGCAGATCAACGGACGTGACGAACTTGAAATTCCGGTCAAGGCAAAA
TTAGATGGCGAGTATGTGAAAAAATATGGGTTTACAATGGATGTACGGTGTTTCTTTGGTACATTCTTAAGCGTTTTGAG
ACAGGATGGAGTGGTTGAAGGTGGAACAGGGAGCATGAAGGGGAAATGA

Protein sequence : 
MTGYRYIKRIIDILLSGLAIIILSPLLLILCIAIKLDSPGPIFFTQKRVGIHKTYFQIYKFRTMRTDTPKDMPTHMLANP
EQYITKTGRFLRKTSLDELPQIFNIFKGDMSIVGPRPALWNQDDLVAERDKYGANDVTPGLTGWAQINGRDELEIPVKAK
LDGEYVKKYGFTMDVRCFFGTFLSVLRQDGVVEGGTGSMKGK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0070 YP_300160.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 5e-32 51
cap1N AAL26667.1 type 8 capsule synthesis gene Virulence SCCcap1 Protein 7e-31 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RO1_35310 YP_007779579.1 Sugar transferases involved in lipopolysaccharide synthesis VFG1369 Protein 1e-44 64
RO1_35310 YP_007779579.1 Sugar transferases involved in lipopolysaccharide synthesis VFG1309 Protein 4e-30 45