Gene Information

Name : RO1_26230 (RO1_26230)
Accession : YP_007778850.1
Strain : Roseburia intestinalis XB6B4
Genome accession: NC_021012
Putative virulence/resistance : Resistance
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2640714 - 2641469 bp
Length : 756 bp
Strand : +
Note : -

DNA sequence :

ATGGACGCAGCACAAATCCTAAAACCATTTGCAAATGAACATATACCGACAGACACCGAAAAAACTGCCACAGCAGAACA
CACATCCGAGATCATCACCATGCAAAATGTCAACAAATCCTACAAGATGGGATCTGGTTCCCTGCATGTATTAAAAGACA
TTTCCCTGACCGTCGAACAGGGAGAATACCTTGCCATCTTAGGGCCATCCGGTTCTGGCAAAAGTACTCTGATGAATATC
ATCGGCTGCATGGATGTCTTAGACGAGGGAACCTATAACCTTGACGGTGTGGAGATCGAAAAGGCAAAGGAAAAAGAACT
GACTAATATCCGCAACCAGAAGATCGGATTCATTTTCCAGAAATATCATCTGATTCCGACCTACAATGTACTTCAGAATA
TCGTCATGCCGCTTTTGATGCGTGGAATGACCTTGAAGGATGCAAGAGATGCCAGCATGGATACCATTGCAATGTTAGGA
CTTGCAGAGCGTATCGATCACAAACCGAATGAGCTTTCCGGCGGTCAGCAGCAGCGTGTTGCAATCGCGCGTGCCTTAGT
CGGACAGCCGACGATCCTCTTAGCAGATGAGCCGACCGGAGCCTTAGACCGTAACAGCGGAAAAGAAGTGCTGAAACTAT
TTCAGTGTCTGAGTGATATGGGAAATACGATCGTCATGATCACGCATGATTTAAGCGTTGCCGAACATGCGAAGAGAGTG
GTACGTATCGTGGATGGGGAACTCTATGAAAATTAG

Protein sequence :

MDAAQILKPFANEHIPTDTEKTATAEHTSEIITMQNVNKSYKMGSGSLHVLKDISLTVEQGEYLAILGPSGSGKSTLMNI
IGCMDVLDEGTYNLDGVEIEKAKEKELTNIRNQKIGFIFQKYHLIPTYNVLQNIVMPLLMRGMTLKDARDASMDTIAMLG
LAERIDHKPNELSGGQQQRVAIARALVGQPTILLADEPTGALDRNSGKEVLKLFQCLSDMGNTIVMITHDLSVAEHAKRV
VRIVDGELYEN

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
Cp1002_1464	YP_005681730.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	1e-32	44
CpC231_1466	YP_005683828.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	3e-33	43
cpfrc_01473	YP_003783873.1	hypothetical protein	Not tested	PiCp 5	Protein	3e-33	43
CpI19_1473	YP_005685914.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	3e-33	43

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
RO1_26230	YP_007778850.1	ABC-type antimicrobial peptide transport system, ATPase component	NC_012469.1.7686878.	Protein	1e-49	49
RO1_26230	YP_007778850.1	ABC-type antimicrobial peptide transport system, ATPase component	CP001581.1.gene798.p	Protein	2e-40	45
RO1_26230	YP_007778850.1	ABC-type antimicrobial peptide transport system, ATPase component	NC_008702.1.4606598.	Protein	3e-46	43
RO1_26230	YP_007778850.1	ABC-type antimicrobial peptide transport system, ATPase component	CP001581.1.gene598.p	Protein	4e-36	41