Gene Information

Name : RO1_18780 (RO1_18780)
Accession : YP_007778207.1
Strain : Roseburia intestinalis XB6B4
Genome accession: NC_021012
Putative virulence/resistance : Resistance
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1884096 - 1884770 bp
Length : 675 bp
Strand : +
Note : -

DNA sequence :

ATGAGTGTGATATTAGAAACCAAGCAGCTTTGTAAGTTTTATGGCGCAGGTGAGAATCAGGTCAAAGCGGTCAATCAGGT
GGACATTCAGATTGAACAGGGAGAATTTGTCGCAATTGTTGGAAAGTCAGGTTCCGGTAAAAGTACATTACTTCATATGC
TTGGAGGGCTAGACACCCCGACAAAAGGCAGTGTTACTTTAGCAGGGAAAGATTTATACAGGATGAAGGAAGATGCCCTT
GCTGTTTTCCGCAGAAGAAAAATCGGATTTGTTTTTCAGGCATTTAATCTGGTTTCATCTGTTAATGTCTGGGAAAATAT
TGTACTGCCACTGGGACTGGATGGAAGAAAAGTGGATGAAGCGTATGTAAATGATATTATTGCAACTCTGGGGATTGAAA
AGAGGATTTACAATCTGCCAAATCAGTTATCCGGAGGACAGCAGCAGAGAGTAGCAATTGCAAGAGCACTGGTGAATCGT
CCGGAAATTATATTTGCAGATGAACCGACAGGAAATCTTGATTCTAAGACCAGTGATGAGGTGATCGCCCTGCTTAAGAT
GACAGCAAAAAAATATGGACAGACAATTGTAATGATTACCCATGATGACGAAATTGCACAGGTCGCTGACCGTATTCTGG
TGATTGAGGACGGACAGGTGGTGGATTTCAGATGA

Protein sequence :

MSVILETKQLCKFYGAGENQVKAVNQVDIQIEQGEFVAIVGKSGSGKSTLLHMLGGLDTPTKGSVTLAGKDLYRMKEDAL
AVFRRRKIGFVFQAFNLVSSVNVWENIVLPLGLDGRKVDEAYVNDIIATLGIEKRIYNLPNQLSGGQQQRVAIARALVNR
PEIIFADEPTGNLDSKTSDEVIALLKMTAKKYGQTIVMITHDDEIAQVADRILVIEDGQVVDFR

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
Cp1002_1464	YP_005681730.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	2e-38	47
cpfrc_01473	YP_003783873.1	hypothetical protein	Not tested	PiCp 5	Protein	6e-40	46
CpI19_1473	YP_005685914.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	6e-40	46
CpC231_1466	YP_005683828.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	6e-40	46

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
RO1_18780	YP_007778207.1	ABC-type antimicrobial peptide transport system, ATPase component	CP001581.1.gene598.p	Protein	4e-67	63
RO1_18780	YP_007778207.1	ABC-type antimicrobial peptide transport system, ATPase component	CP001581.1.gene798.p	Protein	1e-58	55
RO1_18780	YP_007778207.1	ABC-type antimicrobial peptide transport system, ATPase component	NC_012469.1.7686878.	Protein	2e-40	46
RO1_18780	YP_007778207.1	ABC-type antimicrobial peptide transport system, ATPase component	NC_008702.1.4606598.	Protein	6e-34	46