Gene Information

Name : CC1_34370 (CC1_34370)
Accession : YP_007771371.1
Strain : Coprococcus catus GD/7
Genome accession: NC_021009
Putative virulence/resistance : Unknown
Product : conserved hypothetical protein TIGR00246
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3508412 - 3508891 bp
Length : 480 bp
Strand : +
Note : -

DNA sequence :
ATGAGAATTACATTAGTAACAGTCGGTAAAATCAAAGAAAAATTTTTTGTACAGGCCATTGCAGAATATAGTAAGCGGTT
AAGCCGTTATTGTAAATTAGAAATCATCGAAGTGGCTGATGAGAAGACGCCGGACAAAGCCAGTGAAGCCCTGGAACTGC
AGATTAAGGAAAAAGAGGGCGAACGTATCTTAAAGTCGATTAAAGACGATAGTTATGTGATCGCTCTGGCCATTGAAGGA
AAAATGCGCAGTTCCGAGGAGCTGGCGGCGAGAATTGAGAAGCTTGGAATCGGCGGTGAAAGTCATTTGACTTTTGTCAT
CGGCGGTTCTCTTGGTTTGGCTCCGGCAGTTTTAAACCGTGCCGATGAAAAACTTAGTTTTTCACCAATGACATTTCCGC
ATCAGCTGATGCGTGTCATTTTGCTGGAGCAGATTTATCGGAGCTATCGAATTATTAATCATGAACCTTACCATAAATAG

Protein sequence :
MRITLVTVGKIKEKFFVQAIAEYSKRLSRYCKLEIIEVADEKTPDKASEALELQIKEKEGERILKSIKDDSYVIALAIEG
KMRSSEELAARIEKLGIGGESHLTFVIGGSLGLAPAVLNRADEKLSFSPMTFPHQLMRVILLEQIYRSYRIINHEPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 8e-41 58
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 8e-41 58
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 4e-41 58
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 8e-41 56
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 8e-41 56
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-40 56
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 8e-41 56
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 8e-41 56
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 8e-41 56
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 4e-41 56
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 8e-41 56
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 8e-41 56
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 8e-41 56
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 9e-41 56
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 8e-41 56
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 8e-41 56
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-40 56
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 3e-38 55