Gene Information

Name : OA238_c05470 (OA238_c05470)
Accession : YP_007698238.1
Strain : Octadecabacter arcticus 238
Genome accession: NC_020908
Putative virulence/resistance : Virulence
Product : metal ion ABC transporter periplasmatic substrate binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 566446 - 567318 bp
Length : 873 bp
Strand : -
Note : -

DNA sequence : 
ATGTCGATCCGCATCGCAGCCCTATTGTCCCTGCTCGCCACCCCCATGGCGGCGGATGACTTCAAAGTCGTCACAACATT
CACCGTCATCGCAGACATGGCCCGCAACGTGGCAGGCGATTACGCAACAGTTGAATCCATCACCCGTGCTGGCGCTGAAA
TCCACGGATATCAGCCGACGCCGCGCGATCTGGTGCGCGCCTCTGGTGCAGACCTGATTTTGTGGAACGGGATGAACCTG
GAACTTTGGTTCGAACAATTCATCGACAACCTTGGACCTATTCCCTCTGCCACGATCTCTGACGGGATTGAAACCATCTC
TATCCGTCAAGGCAGCTATCAAGGCGCGCCCAACCCCCATGCATGGATGTCACTGGATAACGCACTGATCTACGTTGATA
ATATTGCGGCAGCAATGTCACTGCATGATCCTGACAACGCCTCTTCCTACTCTGCAAACGCCGAAATCTACAAAGCGGAA
ATCACAGCCGCGATTGCCCCGCTGCGCGAACAAATCCTCGCGATCCCCAAGGACGAACGTTGGCTCGTAACCTGCGAAGG
CGCGTTCAGCTATCTGGCGCGCGACTTCGGCCTGAAAGAAGCCTACCTTTGGCCGATGAACGCAGATCAAACCGGAACCC
CGCAACAAGTGCGCAGCGTCATCGACATTGTGCGCGAAAACAATGTCCGCGCCGTGTTCTGTGAAAGCACCGTCAACACC
GACCCCGCACAGCAAGTGGCACGCGAAACGGGCGTAGCCTATGGCGGCGTGTTGTATGTGGACAGCCTGTCATTGGAAGA
CGGCCCCGTCCCGACCTACATCGACCTGCTGCGTGTCACCACTGAAACCATCGTTAAGGGGCTGACGGAATGA

Protein sequence : 
MSIRIAALLSLLATPMAADDFKVVTTFTVIADMARNVAGDYATVESITRAGAEIHGYQPTPRDLVRASGADLILWNGMNL
ELWFEQFIDNLGPIPSATISDGIETISIRQGSYQGAPNPHAWMSLDNALIYVDNIAAAMSLHDPDNASSYSANAEIYKAE
ITAAIAPLREQILAIPKDERWLVTCEGAFSYLARDFGLKEAYLWPMNADQTGTPQQVRSVIDIVRENNVRAVFCESTVNT
DPAQQVARETGVAYGGVLYVDSLSLEDGPVPTYIDLLRVTTETIVKGLTE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 2e-83 64
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 2e-83 64
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-83 64
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 2e-83 64
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 2e-83 64

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
OA238_c05470 YP_007698238.1 metal ion ABC transporter periplasmatic substrate binding protein BAC0349 Protein 1e-83 64
OA238_c05470 YP_007698238.1 metal ion ABC transporter periplasmatic substrate binding protein BAC0439 Protein 3e-86 62

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
OA238_c05470 YP_007698238.1 metal ion ABC transporter periplasmatic substrate binding protein VFG0525 Protein 1e-83 64