Gene Information

Name : OA238_c05460 (OA238_c05460)
Accession : YP_007698237.1
Strain : Octadecabacter arcticus 238
Genome accession: NC_020908
Putative virulence/resistance : Virulence
Product : metal ion ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 565517 - 566449 bp
Length : 933 bp
Strand : -
Note : -

DNA sequence : 
ATGAACACGCCTGACACATTGCCACCACCTGCCCCGCATCAAACGTCCAAGAACCAAGCGGGGCTTTATGCCGATGGCCT
CACCGTCACCTACCGCAATGGCGTAACTGCCCTGCAAAACGCGAGCTTTGCGATCCCGCGCGGAACCATCGCTGCACTTG
TTGGGGTTAACGGCGCGGGAAAGTCCACACTTTTCAAGGCGATTATGGGTTTTTTGCCCGCCGCCGCAGGTGAAATCAGT
GTCCTTGGCCAGTCGGTAAATCAAGCGATCAAAGCGGGCATCATTGCCTACGTACCACAAGCCGAAGAAGTTGATTGGTC
CTTTCCAGTACTCGTCAGCGACGTCGTGATGATGGGCCGTTACGGACACATGGGGATGCTGCGCCGCCCCAAACCTATCG
ACTTTGAAGCCGTCAAGAGTTCGCTGGAACGCGTCGGCATGACCGAGTACCGCGACCGCCAAATCGGTGAACTTTCCGGC
GGACAGCGCAAACGCGTCTTTCTTGCGCGCGCACTGGCGCAAAACGGCCAGGTTATCTTGCTTGATGAGCCATTTACCGG
CGTCGATGTGCATACGGAAGAAGCGATCATTACTTTGCTGCGCGAACTGCGCGACGAGGGTCGCGTCATGCTGGTGTCCA
CCCACAACCTCGGCTCTGTGCCAGAGTTTTGCGACCAAACCGTGCTGGTCAAAGGCACTGTGCTGAACTTCGGCCCGACG
AGCGAAGTGTTCACCAAAACCAACCTCGAAGCCGCGTTCGGCGGTGTGCTGCGCCACTTCGTTCTGGGCGGCGATGATCT
GCACGACGATGACGACCAACGCAAAGTCACCATCCTGACCGACGACGAACGCCCGTTCGTCATTTACGACGATCAAACCC
GCACACAATCTGACGTTGGTGGTGAAAAGGTCGGGGGCGATAAGCCTGAATGA

Protein sequence : 
MNTPDTLPPPAPHQTSKNQAGLYADGLTVTYRNGVTALQNASFAIPRGTIAALVGVNGAGKSTLFKAIMGFLPAAAGEIS
VLGQSVNQAIKAGIIAYVPQAEEVDWSFPVLVSDVVMMGRYGHMGMLRRPKPIDFEAVKSSLERVGMTEYRDRQIGELSG
GQRKRVFLARALAQNGQVILLDEPFTGVDVHTEEAIITLLRELRDEGRVMLVSTHNLGSVPEFCDQTVLVKGTVLNFGPT
SEVFTKTNLEAAFGGVLRHFVLGGDDLHDDDDQRKVTILTDDERPFVIYDDQTRTQSDVGGEKVGGDKPE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 1e-85 69
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 1e-85 69
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 5e-86 69
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-86 69
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 4e-86 69
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 6e-40 41
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 7e-40 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
OA238_c05460 YP_007698237.1 metal ion ABC transporter ATP-binding protein BAC0350 Protein 2e-86 69
OA238_c05460 YP_007698237.1 metal ion ABC transporter ATP-binding protein BAC0440 Protein 4e-78 60
OA238_c05460 YP_007698237.1 metal ion ABC transporter ATP-binding protein BAC0400 Protein 7e-47 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
OA238_c05460 YP_007698237.1 metal ion ABC transporter ATP-binding protein VFG0526 Protein 2e-86 69