Gene Information

Name : OA238_c05450 (OA238_c05450)
Accession : YP_007698236.1
Strain : Octadecabacter arcticus 238
Genome accession: NC_020908
Putative virulence/resistance : Virulence
Product : metal ion ABC transporter permease protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 564669 - 565520 bp
Length : 852 bp
Strand : -
Note : -

DNA sequence :
ATGACCTACCTGCTTGAACCCTTTACCTACGCGTTCATGCTAAACGCGATGTTTGTGTCCGCACTGGTCGGCGCTGTTTG
TGCGTTTCTGTCGTGTTATCTGATGCTTAAAGGCTGGTCTTTGATCGGGGATGCACTGTCCCATTCCATCGTTCCCGGGG
TCGCGGGGGCCTATATGTTGGGCCTGCCGTTCGCCTTGGGCGCGTTTTTGTCGGGTGGTTTGGCAGCAGCCGCGATGCTG
TTTCTCAACCAACGCACGGGGCTTAAAGAGGATGCGGTCATCGGTCTCATCTTCACCAGCTTCTTCGGACTTGGCCTGTT
TATGGTCTCCGTTTCGCCAGTCGCGGTGGACGTGCAAACCATCATCCTCGGCAACATTCTGGCGATAACGCCCAGCGACA
CGATCCAGCTGTCAATCATCGGGATTGTCTGCCTTGTGGTGCTTCTGGCCAAGTGGAAAGACCTGATGGTCGCATTCTTT
GATGAAAACCACGCGCGCTCCATTGGTCTGCGACCCGACCGTCTGCGGTTCATGTTTTTCGTCCTTCTGTCAGCCGCCTG
CGTCGCAGCGCTGCAAACCGTTGGCGCGTTCCTTGTGATCGCCATGGTCATCACGCCCGGTGCGACGGCCTATCTGCTCA
CGGACCGTTTCCCGCGTTTGCTCGTGATTGCCGTCACAATCGGTTCCCTGTCCAGTTTCTTCGGTGCCTATATCTCCTAT
TTCCTCGATGGGGCCACAGGCGGCGTCATTATCTGCCTGCAAACATCCGTTTTCATCCTCGCCTTTTTCTTTGCCCCCAA
ACACGGACTTCTGGCATCGCGCCGTCGCGCTGCGGAGGCCCTTAAAACATGA

Protein sequence :
MTYLLEPFTYAFMLNAMFVSALVGAVCAFLSCYLMLKGWSLIGDALSHSIVPGVAGAYMLGLPFALGAFLSGGLAAAAML
FLNQRTGLKEDAVIGLIFTSFFGLGLFMVSVSPVAVDVQTIILGNILAITPSDTIQLSIIGIVCLVVLLAKWKDLMVAFF
DENHARSIGLRPDRLRFMFFVLLSAACVAALQTVGAFLVIAMVITPGATAYLLTDRFPRLLVIAVTIGSLSSFFGAYISY
FLDGATGGVIICLQTSVFILAFFFAPKHGLLASRRRAAEALKT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-84 76
sitC NP_461784.1 permease Virulence SPI-1 Protein 3e-84 76
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-84 76
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-84 76
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 3e-84 76

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
OA238_c05450 YP_007698236.1 metal ion ABC transporter permease protein BAC0351 Protein 2e-84 76
OA238_c05450 YP_007698236.1 metal ion ABC transporter permease protein BAC0441 Protein 3e-68 67
OA238_c05450 YP_007698236.1 metal ion ABC transporter permease protein BAC0442 Protein 1e-35 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
OA238_c05450 YP_007698236.1 metal ion ABC transporter permease protein VFG0527 Protein 1e-84 76