Gene Information

Name : OA238_c05440 (OA238_c05440)
Accession : YP_007698235.1
Strain : Octadecabacter arcticus 238
Genome accession: NC_020908
Putative virulence/resistance : Virulence
Product : metal ion ABC transporter permease protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 563827 - 564672 bp
Length : 846 bp
Strand : -
Note : -

DNA sequence : 
ATGATCGAAAGCCTTAGTGATCTTCTCATTCCGTTCCAGTTCTCGTTCATGCACGGCGCGTTCTACATCGCACTGCTGAT
CGGTCCGCCGACCGCGTTGCTGTCGTGTTTCCTCGTCCTAAAAGGCTGGTCGTTGATGGGCGACGCAGTGTCCCACGCGG
TACTGCCGGGCGTTGTGGTCGCATATATCATTGGCATTCCCCTCATCATCGGGGCGTTTGTCGCGGGCATGATCTGCTCA
CTTTTGACCGGATACCTCGACGCGAACTCCCGCGTGCGCCAAGACACCGTCATGGGCGTTGTGTTCTCGGGCATGTTTGG
GCTGGGGTTGGTTTTATATACGAAGATTGAAACCAACATCCACCTCGATCACATCTTGTTCGGCAACATGCTCGGCGTTG
AAACCGTGGACTTGTGGACATCGGGTATCATCGGAATTTTCGTATCCGCCGCTCTGCTGATCACTTGGAAAGAACTGCTT
CTCAACGCGTTTGACCCTGCGCAGGCCCGTGCGATCGGTCTGCCGACCAAACTTCTACACTACGGATTGCTCACAATCCT
GTCGCTGACAATCGTCGCGACGCTAAAGGCTGTCGGCCTGATCCTCGCCATTGGCCTCCTCATCGCGCCGGGCGCCATCG
CATTTCTGATCACGCGGCAATTCCGGCATATGCTTGTGATGGCGGTGATCGTGTCAACGTTCTCGCTGGTGACAGGTGTT
TACCTTAGCTTCTGGATCGGCTCCGGCCCCGGCCCGACGGTCATTTTGACCCTTACCACCCTATTCATTGTGGCCTTTAT
CTTTCGCATGCTGCGCAACAAAGCCCGCGAGGCCCAAAGCATATGA

Protein sequence : 
MIESLSDLLIPFQFSFMHGAFYIALLIGPPTALLSCFLVLKGWSLMGDAVSHAVLPGVVVAYIIGIPLIIGAFVAGMICS
LLTGYLDANSRVRQDTVMGVVFSGMFGLGLVLYTKIETNIHLDHILFGNMLGVETVDLWTSGIIGIFVSAALLITWKELL
LNAFDPAQARAIGLPTKLLHYGLLTILSLTIVATLKAVGLILAIGLLIAPGAIAFLITRQFRHMLVMAVIVSTFSLVTGV
YLSFWIGSGPGPTVILTLTTLFIVAFIFRMLRNKAREAQSI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-62 61
sitD NP_461785.1 permease Virulence SPI-1 Protein 4e-62 61
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 3e-62 61
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 5e-62 61
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 5e-62 61

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
OA238_c05440 YP_007698235.1 metal ion ABC transporter permease protein BAC0352 Protein 2e-62 61
OA238_c05440 YP_007698235.1 metal ion ABC transporter permease protein BAC0442 Protein 4e-56 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
OA238_c05440 YP_007698235.1 metal ion ABC transporter permease protein VFG0528 Protein 2e-62 61