Gene Information

Name : OA238_c30860 (OA238_c30860)
Accession : YP_007700549.1
Strain : Octadecabacter arcticus 238
Genome accession: NC_020908
Putative virulence/resistance : Unknown
Product : IS3 family transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3268937 - 3269596 bp
Length : 660 bp
Strand : +
Note : -

DNA sequence :
ATGACCGAAGAGTTGAAAGAGATCGGATTGGATATCGGTCACCGCCGCGTTGGTCGTTTGATGCGCCAGAACGGCATATC
CGTGGTTAGAACCCACAAACACAAGGTCACCACAGACAGCAATCACAAGTTCAACATTGCGCCAAACTTGTTGGATCGAA
ACTTCATTGCAGATCAACCAAGCCAAAAATGGGCTGGGGACATTACCTATATCTGGACGCGTGAGGGTTGGCTTTACCTG
GCTGTGATCGTGGATTTACATTCCAGGCGCGTGATTGGATGGGCTGTCAGCAATCGGATGAAGCGTGCCCTGGCAATCAG
GGCGTTGAAGATGGCTATCGCCTTCCGGTCACCGCCAAAGGGCTGCATCCATCACACGGATCGCGGCAGCCAATACTGTT
CGCATGACTACCAAAAGATCCTGCGCCAGAACGGCTTCAAAGTATCGATGAGTGGCAAAGGCAATTGCTATGATAATGCG
GCAGTTGAGACGTTCTTCAAAACCATCAAGGCCGAGCTGATCTGGCGTCATACTTGGGAGACATGCCAGTCGGCTAAAAT
AGCAGTCTTTGAATATATCAACGGCTTCTACAATCCACGCCGAAGGCACTCAACGTTGGGCTGGAAAAGTCCTGTCGCCT
TCGAACGGAAGGTGGCTTAA

Protein sequence :
MTEELKEIGLDIGHRRVGRLMRQNGISVVRTHKHKVTTDSNHKFNIAPNLLDRNFIADQPSQKWAGDITYIWTREGWLYL
AVIVDLHSRRVIGWAVSNRMKRALAIRALKMAIAFRSPPKGCIHHTDRGSQYCSHDYQKILRQNGFKVSMSGKGNCYDNA
AVETFFKTIKAELIWRHTWETCQSAKIAVFEYINGFYNPRRRHSTLGWKSPVAFERKVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 6e-77 72
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 6e-77 72
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 6e-77 72
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 6e-41 46
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 6e-41 46
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 1e-38 46
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 7e-39 46
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 1e-38 46
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 4e-41 45
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 4e-41 45
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 3e-41 45
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 5e-41 45
unnamed AAF09022.1 unknown Not tested SHI-O Protein 3e-41 45
unnamed AAF09030.1 unknown Not tested SHI-O Protein 4e-41 45
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 1e-37 45
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 1e-40 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
OA238_c30860 YP_007700549.1 IS3 family transposase VFG1706 Protein 2e-41 45
OA238_c30860 YP_007700549.1 IS3 family transposase VFG1631 Protein 6e-38 45