Gene Information

Name : OA238_c17970 (OA238_c17970)
Accession : YP_007699368.1
Strain : Octadecabacter arcticus 238
Genome accession: NC_020908
Putative virulence/resistance : Unknown
Product : IS66-like transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1889759 - 1891402 bp
Length : 1644 bp
Strand : -
Note : -

DNA sequence : 
TTGCCTTTGTGGGATTCCCATGATGCCCGAGATTTGGTATGTAATGGCATGAGTAAGACCCCTCCAAATCTGACTAATCT
GCCCCCTGAAGTACAGGCATACGTTGCCGCGCAAACAGCGGAATTGTCAGAGCTGAAGCAAGCGTTTCTCGGGTCATCCC
TTGGCCATGCGACGGTACAAAAACGCCTCAAGGATGAGATGGCATCAGTGGACGCCGCCCTGAGTGCCGAGCGCACCGCT
CATGCGCGGGCCATCCAGAACCGAGACACCATCATCGCCGATCTGCGCCTGCAACTCCACGGTCACAACAAGCACCGCTT
TGGCTCAAAGTCGGAAAGCAGTGCACAGCTGGCGCTTGAGTTGATCCTTGAAGAACTTGAGATCGAACAAGCCGTTGAGA
CAGATGATGAACCCTCTGACGCTGAGGCCAAGCCGCCCCGCACACCGCGCAAGCGCAAACCTTTCCCAAAGGGGCTGAAG
CGTGTCCAAAAGACCATCACCCCCAGTGATGCTTGCACCGACTGTGGCGGCAGCTTCAAAGTGCTTGGAACGGATGTGAT
GGAGGAGTTGGAATATGTCCCGGGACATTACATCGTGAACCAAATTGGCCGCCCGCGTCTGGCCTGCACCTGTTGTGAGG
CCGTTGTTCAGGCTGAGATGCCAAGCCGACCCATTCCGAAGAGCTTTGTCGGCCCCGCGCTGATGGCCCACATCCTGTGC
TGTAAATACGGCTATCATCTGCCGCTGTATCGCCAGAGCCAGATGTTTGCCAACGAGGGCATTGATCTGAGTGGATCGCT
CATGGCGGGATGGGTCGGCAAATGCACCAAACTGCTGGAGCGCGTCTCAGATGCAATCTGCGATCACGTCTTTGAGGCGC
AGGCGATCTTCATGGATGACACAACGGTCAAGCTGCTCCAGAAGGGCAATGGCAAAGGAAAGAATAAGACCAAAACCGCG
CGACTGTGGGTCTATGCCCGAAAAGAAGACACTTGGGCCAGCGGAGCTCCACCTGCGGTGTGGTACCAGTTCTCCACCAG
CCGTGAGGCGGAGCATCCCAGCAAGCATCTCGAAAGCTATGAAGGCTACGCCCATGCGGATGCCTATGCTGGGTATAATG
ACGCCTACCGCACGGGGCGGGTCAAAGAGATGGCATGCATGGCCCATGTGCGGCGTGAGTTCTTTGACCTTTATGAAAGC
ACAAAGCTGCCCGTGGCGGGCGAAGCCGTGCTGCGGATTAAAAAGCTCTATGATGTTGAGACACAAGCGCGGTTCCTGCC
CCCTGCGGAACGCGTGGCCCTGCGTCAGGAATACGCCAAGCCGATCTTTGATGACCTGGAAGTCTGGCTTAAAGAGCAAC
TGGGCAAGATCTCTAGCAAGACGCCGCTGGCCAAGGCGATCAAATATGCACTGGCGCGCCTGCCAAAGGCACGGCCCTAT
CTTGATCACGGCTTTCTTGAGCTGGACAACAACACAGCCGAGCGCGCAGTGCGCCCTGTGGCCGTGGGACGCAAAAACTA
TCTCTTCATGGGATCAGAAGCAGGCGGCAAATCTGCAGCAATTGCTTATACGTTGATAGAGACCGCCAAGATGAACAAAG
TGAATCCCGAAGCCTGGCTCGCATGGGTGCTGGAACGCATCTAG

Protein sequence : 
MPLWDSHDARDLVCNGMSKTPPNLTNLPPEVQAYVAAQTAELSELKQAFLGSSLGHATVQKRLKDEMASVDAALSAERTA
HARAIQNRDTIIADLRLQLHGHNKHRFGSKSESSAQLALELILEELEIEQAVETDDEPSDAEAKPPRTPRKRKPFPKGLK
RVQKTITPSDACTDCGGSFKVLGTDVMEELEYVPGHYIVNQIGRPRLACTCCEAVVQAEMPSRPIPKSFVGPALMAHILC
CKYGYHLPLYRQSQMFANEGIDLSGSLMAGWVGKCTKLLERVSDAICDHVFEAQAIFMDDTTVKLLQKGNGKGKNKTKTA
RLWVYARKEDTWASGAPPAVWYQFSTSREAEHPSKHLESYEGYAHADAYAGYNDAYRTGRVKEMACMAHVRREFFDLYES
TKLPVAGEAVLRIKKLYDVETQARFLPPAERVALRQEYAKPIFDDLEVWLKEQLGKISSKTPLAKAIKYALARLPKARPY
LDHGFLELDNNTAERAVRPVAVGRKNYLFMGSEAGGKSAAIAYTLIETAKMNKVNPEAWLAWVLERI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 7e-81 46
tnp AEA34686.1 transposase Not tested Not named Protein 1e-75 43
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 9e-75 42
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 4e-74 42
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 4e-74 42
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 6e-75 42
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 2e-74 42
unnamed AAC31494.1 L0015 Not tested LEE Protein 5e-75 42
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 7e-75 42
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 7e-75 42
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 1e-74 42
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 1e-74 42
unnamed AAL57570.1 unknown Not tested LEE Protein 3e-75 42
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 2e-72 41
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 1e-69 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
OA238_c17970 YP_007699368.1 IS66-like transposase VFG0793 Protein 3e-75 42