Gene Information

Name : OA238_c13190 (OA238_c13190)
Accession : YP_007698941.1
Strain : Octadecabacter arcticus 238
Genome accession: NC_020908
Putative virulence/resistance : Unknown
Product : IS3 family transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1376577 - 1377461 bp
Length : 885 bp
Strand : +
Note : -

DNA sequence :
ATGGAAGAGATGACCATGTTCATAGACGACCATCGTGAGCATCTTGGCGTCGAGGCGATTTGCAAGGTTTTGCCGATCGC
GCCATCCACATATTACCACCACAAATCGATTGAGCTTGATCCTGAGAAGGCCTCTGCCCGCGCAAAGCGCGATACCTTCT
TAATGACCAAGATCCACATCTACTGGGAGAAGAGCAGGAAGCGATATGGGGCCGTGAAAATCTGGCATGACTTGCTCGAC
GAGGGCACTGTAGTCGCCCGTTGCACGGTTGTTCGCCTCATGAAAAGCATGGGAATACAGGGAATTACACGCGGTGATGT
GACAACCACGAAGAGTAACTCTGCCTTGCCGTGCCCTGAAGACAAGGTGAACCGAAAGTTCAAGGCACCAGCACCAAACA
TCTTGTGGGTTGCTGACTTTACCTACGTCAGAACCGCCGTCGGCTTTGTATATGTCGCGTTCATCATTGATGTCTTCGCG
CGCTACATCGTTGGCTGGAAGGTCTCTTCCTCTCCCAATGCCCAGATGGTGCTCGATGCTCTGGATCAAGCGCTAGCTGC
GCGTCAACCAGATCCAAAGACCCTTATTCATCATAGCGACAGAGGCGTTCAATACTTGTCGACCAAATACACAGAGCGCC
TTGAAGAAGCCAAAATCGATCCGTCAGTTGGCAGCGTTGGTGACAGCTACGACAACGCGATGGCCGAGACAATCAACGGT
CTCTACAAGGCTGAGGTCATCGAGCATGAGGGCCCGTGGCAAGGCAAAAAAACCTCGAACTTGCAACGCTCGATTGGGTT
CACTGGTTCAATCACGAACGCCGTTTTGGACCCATCGGATACATCGCTCCAGCACAAGCAGAAAGGAACTTCTATGAGAG
CCTGA

Protein sequence :
MEEMTMFIDDHREHLGVEAICKVLPIAPSTYYHHKSIELDPEKASARAKRDTFLMTKIHIYWEKSRKRYGAVKIWHDLLD
EGTVVARCTVVRLMKSMGIQGITRGDVTTTKSNSALPCPEDKVNRKFKAPAPNILWVADFTYVRTAVGFVYVAFIIDVFA
RYIVGWKVSSSPNAQMVLDALDQALAARQPDPKTLIHHSDRGVQYLSTKYTERLEEAKIDPSVGSVGDSYDNAMAETING
LYKAEVIEHEGPWQGKKTSNLQRSIGFTGSITNAVLDPSDTSLQHKQKGTSMRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 1e-50 52
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 1e-50 52
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 1e-50 52
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 5e-51 52
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 2e-50 52
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 4e-51 51
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 4e-52 51
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 9e-53 51
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 4e-52 51
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-52 51
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-51 51
Z1198 NP_286733.1 transposase Not tested TAI Protein 1e-51 51
Z1638 NP_287141.1 transposase Not tested TAI Protein 1e-51 51
Z1221 NP_286756.1 transposase Not tested TAI Protein 1e-51 51
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 6e-52 51
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 9e-52 51
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 2e-51 51
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 6e-42 49
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 3e-38 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
OA238_c13190 YP_007698941.1 IS3 family transposase VFG1602 Protein 3e-51 51