Gene Information

Name : OA238_c12270 (OA238_c12270)
Accession : YP_007698857.1
Strain : Octadecabacter arcticus 238
Genome accession: NC_020908
Putative virulence/resistance : Unknown
Product : IS3 family transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1276369 - 1277268 bp
Length : 900 bp
Strand : -
Note : -

DNA sequence :
ATGACGAACAAGCGTGCTTTCGTCACCGCCCATAAAGCTCAATACGCGGTTTCAATATTATGCCGTCTTCTAGAGATATC
CCGGGGCTGGTTCTACGGGTTCCCAGCCAGTCAGCCTGCACGTGATCAGCGTCAAGCTAATCGCGACGCTCGGGATCAGG
CGTTGCTTCCCAAGATAAAAACCTTCTTCAAGGCCAGTAAGAAATGTTATGGATCAAAGCGTATTTACCAAGACTTACTG
GCGGATAGTGAGGTCGTCTCCGAGCGCCGTGTTGCGAGAATAATGAAGGAACACAAGGTGTCCCCGCTTCTTCGCAAGCG
TAGAAAGCCAATCACAACGGACAGCAATCATAAGCTGAAGCCATCCCCAAACTTGTTGGAACAGAAATTCCACAGCCAGA
CGCCTAATGCCGTTTGGCTGGCGGATATCACCTATATCGACACGGACGAAGGCTGGCTTTATCTGGCTGGCGTGAAGGAC
ATAGCCACGCGTGAGATCGTCGGTTGGGCGATGGAGGATCACATGCGTGCGGAGCTTTGCTGCGCCGCCCTCGAGATGGC
TCTGGGACGCAGAGGCCCGGTTCCGGGATTGATACACCACTCCGATAGGGGCGGCCAATATGCTGGCGGGGACTATCGCA
AGCTGATCAAAAAGGCGAAACTCACTCAATCCATGAGCCGCAAGGGCCAATGCCTCGACAATGCGCCGATGGAAAGCTTC
TTTGCTTCATTGAAAAAGGAGATGGTTCACCAGCGGCGCTTTAGAACACACGCTGAGGCCAAGGCCGCCATCTTCGAATA
CATTGAGGTCTTCTACAACCGCCAGCGCCGTCATTCAGGCGTCGGCTACAAAACGCCAAAACAGGCTTTCGAAGATATGA
CTTGGAAAATGGCAGCGTAG

Protein sequence :
MTNKRAFVTAHKAQYAVSILCRLLEISRGWFYGFPASQPARDQRQANRDARDQALLPKIKTFFKASKKCYGSKRIYQDLL
ADSEVVSERRVARIMKEHKVSPLLRKRRKPITTDSNHKLKPSPNLLEQKFHSQTPNAVWLADITYIDTDEGWLYLAGVKD
IATREIVGWAMEDHMRAELCCAALEMALGRRGPVPGLIHHSDRGGQYAGGDYRKLIKKAKLTQSMSRKGQCLDNAPMESF
FASLKKEMVHQRRFRTHAEAKAAIFEYIEVFYNRQRRHSGVGYKTPKQAFEDMTWKMAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAF09030.1 unknown Not tested SHI-O Protein 1e-42 49
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 9e-43 49
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 1e-42 49
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 4e-43 49
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 7e-43 49
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 4e-43 49
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 6e-43 49
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 2e-42 49
unnamed AAF09022.1 unknown Not tested SHI-O Protein 3e-43 48
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 1e-40 41
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-40 41
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-40 41
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 2e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
OA238_c12270 YP_007698857.1 IS3 family transposase VFG1706 Protein 4e-43 49