Gene Information

Name : SHJGH_3000 (SHJGH_3000)
Accession : YP_007692000.1
Strain : Streptomyces hygroscopicus TL01
Genome accession: NC_020895
Putative virulence/resistance : Virulence
Product : iron-siderophore uptake system ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3479552 - 3480364 bp
Length : 813 bp
Strand : -
Note : -

DNA sequence : 
GTGAACCGCCTGTCCGCGGAGAACGTCACCCTCGCCTACGACCAGCGGGTCATCGCCGAGCAGCTGTCGGTGGAGATCCC
GGACAACTCCTTCACGGTGATCGTCGGCCCGAACGCGTGCGGCAAGTCGACGCTGCTGCGGGCGCTGTCGCGGATGCTCC
GGCCCAGCCAGGGCCGGGTGCTGCTGGACGGGCAGGCCATCCAGTCGATGCCCGCCAAGAAGGTCGCGCGGACCCTGGGC
CTGCTGCCGCAGTCGTCCGTCGCGCCCGACGGCATCACGGTCGCCGACCTCGTCGGCCGGGGCCGCTACCCGCACCAGGG
CCTGCTGCGCCAGTGGTCGGCGGAGGACGAGCGGGTCGTGCGGGAGTCGATGCGGCAGACCGGCGTGGCGGAGCTGGCCG
AGCGGTACGTGGACGAGCTGTCCGGCGGGCAGCGGCAGCGGGTGTGGATCGCCATGGCGCTCGCCCAGCAGACCCCGCTG
CTGCTCCTGGACGAGCCGACCACCTACCTGGACATCCAGCACCAGATCGACGTCCTCGACCTGTGCGCCGAGCTGCACGA
GGAGCAGGGCCGGACGCTGGTGGCGGTGCTGCACGACCTCAACCACGCCGCCCGCTACGCCACCCACCTCATCGCCCTGC
GCGGCGGCACGGTGATCGCCGAGGGCGCCCCGAACGACATCGTCACGGCCGAGCTCGTCGAGGAGGTCTTCGGGCTGCGC
TGCCAGGTCATCGAGGACCCGGAGACGGGCACCCCGCTGGTGGTGCCGGCGGCCCGGAAGGCGCGCGCGGAGAAGGCCAC
GGCGGCTTCCTGA

Protein sequence : 
MNRLSAENVTLAYDQRVIAEQLSVEIPDNSFTVIVGPNACGKSTLLRALSRMLRPSQGRVLLDGQAIQSMPAKKVARTLG
LLPQSSVAPDGITVADLVGRGRYPHQGLLRQWSAEDERVVRESMRQTGVAELAERYVDELSGGQRQRVWIAMALAQQTPL
LLLDEPTTYLDIQHQIDVLDLCAELHEEQGRTLVAVLHDLNHAARYATHLIALRGGTVIAEGAPNDIVTAELVEEVFGLR
CQVIEDPETGTPLVVPAARKARAEKATAAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 8e-64 53
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 3e-66 51
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-66 51
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-66 51
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 3e-66 51
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 2e-61 47
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 2e-61 47
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 6e-51 46
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-52 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SHJGH_3000 YP_007692000.1 iron-siderophore uptake system ATP-binding protein BAC0164 Protein 3e-51 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SHJGH_3000 YP_007692000.1 iron-siderophore uptake system ATP-binding protein VFG0925 Protein 1e-78 61
SHJGH_3000 YP_007692000.1 iron-siderophore uptake system ATP-binding protein VFG1042 Protein 3e-51 46