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Name : clpC (CMN_00817) Accession : YP_007685118.1 Strain : Clavibacter michiganensis NCPPB 2581 Genome accession: NC_020891 Putative virulence/resistance : Virulence Product : ATP-dependent protease, ATPase subunit Function : - COG functional category : - COG ID : - EC number : 3.4.-.- Position : 817516 - 820026 bp Length : 2511 bp Strand : + Note : Cmm ortholog CMM_0857; Cms ortholog CMS_0112 DNA sequence : ATGTTCGAGAGATTCACCGACCGCGCTCGTCGCGTCGTCGTCCTGGCCCAAGAAGAGGCCAAGATGCTCAACCACAACTA CATCGGGACCGAGCACATCCTGCTCGGCCTCATCCACGAGGGCGAAGGCGTGGCCGCCAAGGCCCTGGAGTCGCTCGGCA TCTCCCTCGATGCCGTCCGCGAACAGGTCCAGGACATCATCGGCCAGGGCCAGCAGCAGCCCACGGGGCACATCCCGTTC ACGCCGCGCGCCAAGAAGGTCCTGGAGCTGTCGCTCCGCGAGGCCCTCCAGCTCGGCCACAACTACATCGGCACCGAGCA CATCCTCCTCGGCTTGATCCGCGAGGGCGAGGGCGTCGCCGCGCAGGTGCTCGTCAAGCTCGGCGCCGACCTCAACCGCG TGCGCCAGCAGGTCATCCAGCTCCTGTCCGGCTACCAGGGCAAGGAGGCGGTCGCCGTCGGCGGCGAGGCGCAGCAGAGC CAGCAGGCGGGCTCCACGGTCCTCGACCAGTTCGGGCGCAACCTCACGCAGGCCGCGCGCGACGGCAAGCTCGACCCCGT CATCGGGCGCGAGAAGGAGATCGAGCGCGTGATGCAAATCCTGTCGCGCCGCTCCAAGAACAACCCCGTCCTCATCGGCG AGCCCGGCGTCGGCAAGACCGCCGTCGTCGAGGGCCTGGCGCAGGCCATCGTCAAGGGCGACGTCCCGGAGACGCTGAAG GACAAGCAGCTCTACACGCTCGACCTCGGCTCGCTCATCGCCGGGTCCCGCTACCGCGGCGACTTCGAGGAGCGCCTCAA GAAGGTCACCAAGGAGATCCGCACGCGCGGCGACATCATCACCTTCATCGACGAGATCCACACGCTCGTCGGCGCGGGTG CCGCCGAGGGCGCGATCGACGCGGCCAGCATCCTCAAGCCGCTCCTCGCGCGCGGCGAGCTGCAGACCATCGGCGCCACC ACGCTCGACGAGTACCGCAAGCACTTCGAGAAGGACGCGGCCCTCGAGCGCCGCTTCCAGCCCATCCAGGTGCAGGAGCC CTCGCTGCCCCACACCATCAACATCCTCAAGGGCCTGCGCGACCGGTACGAGGCGTTCCACAAGGTGTCCATCACCGACG GCGCCATCGTGTCCGCGGCGAACCTCGCGGACCGCTACATCGCCGACCGGTTCCTCCCGGACAAGGCCATCGACCTGATC GACGAGGCCGGCGCCCGCCTGCGCCTCTCGATCCTGTCGGCGCCGCCGGAGCTCCGCGAGTTCGACGAGCGCATCTCCAC GGTCCGCGTGGCCAAGGAGACCGCCATCGAGGACCAGGACTTCGAGAAGGCCGCGAGCCTGCGTGACGAGGAGAAGAACC TCCTCGGCGAGCGTCTCCGCCTCGAGAAGCAGTGGCGCTCGGGCGACGTCCGCACCACCGCCGAGGTCGACGAGGGCCTG ATCGCCGAGGTGCTGGCGCAGGCCACGGGCATCCCGGTGTTCAAGCTCACGGAGGAGGAGTCCTCGCGCCTCGTCTTCAT GGAGAAGGCCCTGCACCAGCGGGTCATCGGCCAGGAGGAGGCCATCTCGGCCCTGTCCAAGACCATCCGCCGCACGCGCG CCGGGCTCAAGGACCCGCGTCGTCCCTCGGGATCGTTCATCTTCGCCGGCCCCACGGGCGTCGGCAAGACGGAGCTCGCG AAGGCCCTGGCGGAGTTCCTGTTCGACGACGAGGACGCCCTCATCTCGCTCGACATGAGCGAGTACGGCGAGAAGCACAC CGTGAGCCGCCTCTTCGGCGCCCCTCCCGGATTCGTCGGCTTCGAGGAGGGCGGCCAGCTCACCGAGAAGGTGCGCCGCA AGCCGTTCTCCGTGGTGCTCTTCGACGAGATCGAGAAGGCCCACCCGGACATCTTCAACTCGCTGCTCCAGATCCTGGAG GAGGGACGCCTGACGGATGGCCAGGGCCGCGTCGTCGACTTCAAGAACACGGTCATCATCATGACCACCAACCTCGGCAC CAAGGACATCACGGGTGCCCCGGTCGGGTTCCAGGTCGAGAACAACGCCGCGAACTCCTACGAGCGCATGAAGGGCAAGG TCAGCGAGGAGCTGAAGAAGAACTTCAAGCCCGAGTTCCTCAACCGCGTGGACGACACGATCGTCTTCCCGCAGCTGTCG AAGCCCGAGCTGCTCCGGATCGTCGACCTGTTCGTGAAGCGCCTGTCGGACCGGATGATGGACCGCGACCTCACGATCAC GCTCGAGACCGCCGCGAAGGAGCGCCTCATCGAGGTCGGCTTCGACCCGTCGCTCGGCGCCCGGCCCCTCCGCCGCGCGG TGCAGCACGAGATCGAGGACCGCCTGTCGGAGCGCATCCTGCAGGGCGACCTCAACGCGGGCGACCACGTGCACGTGGAC TACGTGGACGGCCAGTTCACGTTCGTCACGACGCAGCGCGAGGGCATCTCGGTCGCGGCCGGCATCGGCACCGGGACCGG CACGCCGGACCTCGCCATCACGAGCGAGTAG Protein sequence : MFERFTDRARRVVVLAQEEAKMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLDAVREQVQDIIGQGQQQPTGHIPF TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKEAVAVGGEAQQS QQAGSTVLDQFGRNLTQAARDGKLDPVIGREKEIERVMQILSRRSKNNPVLIGEPGVGKTAVVEGLAQAIVKGDVPETLK DKQLYTLDLGSLIAGSRYRGDFEERLKKVTKEIRTRGDIITFIDEIHTLVGAGAAEGAIDAASILKPLLARGELQTIGAT TLDEYRKHFEKDAALERRFQPIQVQEPSLPHTINILKGLRDRYEAFHKVSITDGAIVSAANLADRYIADRFLPDKAIDLI DEAGARLRLSILSAPPELREFDERISTVRVAKETAIEDQDFEKAASLRDEEKNLLGERLRLEKQWRSGDVRTTAEVDEGL IAEVLAQATGIPVFKLTEEESSRLVFMEKALHQRVIGQEEAISALSKTIRRTRAGLKDPRRPSGSFIFAGPTGVGKTELA KALAEFLFDDEDALISLDMSEYGEKHTVSRLFGAPPGFVGFEEGGQLTEKVRRKPFSVVLFDEIEKAHPDIFNSLLQILE EGRLTDGQGRVVDFKNTVIIMTTNLGTKDITGAPVGFQVENNAANSYERMKGKVSEELKKNFKPEFLNRVDDTIVFPQLS KPELLRIVDLFVKRLSDRMMDRDLTITLETAAKERLIEVGFDPSLGARPLRRAVQHEIEDRLSERILQGDLNAGDHVHVD YVDGQFTFVTTQREGISVAAGIGTGTGTPDLAITSE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 71 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_007685118.1 | ATP-dependent protease, ATPase subunit | VFG0079 | Protein | 0.0 | 59 |
| clpC | YP_007685118.1 | ATP-dependent protease, ATPase subunit | VFG0080 | Protein | 1e-153 | 53 |
| clpC | YP_007685118.1 | ATP-dependent protease, ATPase subunit | VFG2084 | Protein | 7e-94 | 41 |
