Gene Information

Name : CMN_00303 (CMN_00303)
Accession : YP_007684639.1
Strain : Clavibacter michiganensis NCPPB 2581
Genome accession: NC_020891
Putative virulence/resistance : Virulence
Product : putative AMP-dependent organic acid CoA ligase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 302803 - 304512 bp
Length : 1710 bp
Strand : +
Note : Cmm ortholog CMM_0332; no ortholog in Cms

DNA sequence : 
ATGCACGGACGCGAGCACACGGAGGGCCCGGGTCACGAGCCCGGTGGCGGATGCGCCGACTGGGCCGAGGGGATGGGCCG
GGCCGCCCGGGCGGCGGGGCGGCAGCCGGACGCGCGGCTCGACGGCATCCTGCGGCGGAGCGCCGCCCGCGTGCCCGACC
GCACGGCGCTCGTCGGCGCCGGCGGGCGCTGGACCCACGCCGAGCTCGACGCCGAGGTCGACCTCGCCGCGCGCGGCCTG
ATCCGGTCGGGCATCCGGCCAGACGACCGGATCCTGCTGCAGCTCGCCGACGGCGCCGCCTTCGTCATCGCCTGGTTCGC
GCTCGTGCGCGCCGGCGCCGTGCCCGTGCACGCGATGCCCGCCCACCGGCTCATGGAGCTCGCGCACCTCGCGGCCGGCA
GCGGGGCGCGCGGCATGGTCGTCGCGGAGCGCGTCGGCCGGGACGACGGCCGTGGCCTCGCGGCCGGGGTGCGCGCGGCC
TGCCCCGGGCTCGACCTCGTCATCGTGCACGGGCCGCGACGCGCGGACGGCGCCCTCACGTGGGAGGGGATCCGCGAGCT
CGGGCGCGAGGACGCGAGCCCCGCCCCGGGGCTCGACCCGGTCGCGCCCGACGGCGCGCCCCGCCTCGCGCTCCTCCTGC
ACTCGGGCGGCACCACGGGCCTGCCCAAGCTCATCCCGCGCCACCACGCGGAGTACTCCTACAACGCGTGGGCGGCGGCG
CGCGCGGCGGGCGTCGGTCCCGGCGCGGTGCTGCTGGCCGTGCTGCCCGTGGCCTTCAACTTCACCCTCGCGTGCCCCGG
CGTGCTCGGCGTGCTCGATGCGGGCGGTACCGTCGTCGTCGCGCCCGACCCGGATCCCGCGACGGCCTTCGCGCTCGTCG
CCCGCGAGCGCGTGACGCACGTGGCCCTGACCCCCACGCTGGCGCGGGCGTGGATCGACGAGGCCGCGCACGCGACCGCC
GACCTCTCGAGCCTCCGCGTCGTCCAGGTCGGCGGCGCCCGACTCGACGACGTCACGGCGCGCGCCCTGGAGCCCGCGCT
CGGGGCGACGCTCCAGCAGGTCTACGGGATGGCCGAGGGGCTCGTCTGCATGACCGCCCTCGACGATCCGCCCGAGCTGC
GCTGGAGCACCCAGGGGCGCCCGACCAGCCCCGACGACCTGGTCCGACTGCGTGCCGCCGACGGATCCCTCGCGGCTGAC
GGCGACGAGGGCGAGCTGGAGACCCGCGGGCCGTGCACGCTCCGCGCGTACCACGCGGCCCCCGAGGCGGACGCGTCGGC
CTTCACGCCCGACGGCTTCTACCGCGCCGGCGACATCGTGCGGCGGCTCCCGTCGGGGCACGTCGTGGTCACGGGACGCG
CGAAGGACCAGGTCAACCGCGGCGGCGAGAAGTACTCCGCGGCGGAGGTCGAGCGCTACCTGCAGGCCATGCCGTCCGTG
CGCGCGGCAGCCGTGGTGCCGGTGCCGGATCCCGACCTCGGCGAACGCGCCGTCGCGGTCATCGCCTGCGCGGGGCACGC
TCCCGATCGCCGCGCGGTCGTCGCGCACCTCCGGTCGCTCGGGGTGGCGGCGTACAAGCACCCGGACCGCGTGGTCGCGC
TGCCCGCGCTGCCGCTCACCGCCGTGGGCAAGGTCGACAAGGCCCGGATCGCCGCGCTGCTCTCCGCGGGATCGGGCACG
GATGCGCATGCCGACCGGGACCGTGCTTGA

Protein sequence : 
MHGREHTEGPGHEPGGGCADWAEGMGRAARAAGRQPDARLDGILRRSAARVPDRTALVGAGGRWTHAELDAEVDLAARGL
IRSGIRPDDRILLQLADGAAFVIAWFALVRAGAVPVHAMPAHRLMELAHLAAGSGARGMVVAERVGRDDGRGLAAGVRAA
CPGLDLVIVHGPRRADGALTWEGIRELGREDASPAPGLDPVAPDGAPRLALLLHSGGTTGLPKLIPRHHAEYSYNAWAAA
RAAGVGPGAVLLAVLPVAFNFTLACPGVLGVLDAGGTVVVAPDPDPATAFALVARERVTHVALTPTLARAWIDEAAHATA
DLSSLRVVQVGGARLDDVTARALEPALGATLQQVYGMAEGLVCMTALDDPPELRWSTQGRPTSPDDLVRLRAADGSLAAD
GDEGELETRGPCTLRAYHAAPEADASAFTPDGFYRAGDIVRRLPSGHVVVTGRAKDQVNRGGEKYSAAEVERYLQAMPSV
RAAAVVPVPDPDLGERAVAVIACAGHAPDRRAVVAHLRSLGVAAYKHPDRVVALPALPLTAVGKVDKARIAALLSAGSGT
DAHADRDRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
irp5 CAA73130.1 Irp5 protein Virulence HPI Protein 2e-72 45
irp5 YP_001006819.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 3e-72 45
irp5 YP_002346898.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 5e-73 45
ybtE NP_669710.1 salicyl-AMP ligase Virulence HPI Protein 5e-73 45
ybtE NP_993003.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 5e-73 45
ybtE YP_070120.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 5e-73 45
ybtE CAA21394.1 - Virulence HPI Protein 5e-73 45
ybtE AAA93464.1 yersiniabactin 2,3-dihydoxybenzoate-AMP ligase Virulence HPI Protein 4e-73 45
ybtE YP_853079.1 yersiniabactin siderophore biosynthetic protein Virulence PAI IV APEC-O1 Protein 6e-73 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CMN_00303 YP_007684639.1 putative AMP-dependent organic acid CoA ligase VFG0168 Protein 3e-75 47
CMN_00303 YP_007684639.1 putative AMP-dependent organic acid CoA ligase VFG1817 Protein 2e-76 46