Gene Information

Name : CMN_02293 (CMN_02293)
Accession : YP_007686548.1
Strain : Clavibacter michiganensis NCPPB 2581
Genome accession: NC_020891
Putative virulence/resistance : Virulence
Product : two-component system response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2422770 - 2423624 bp
Length : 855 bp
Strand : -
Note : Cmm ortholog CMM_2335; Cms ortholog CMS_2515

DNA sequence : 
GTGAGCCCCACCTACGATCCCGCGCGCGCCGACGCCGGGCGCCCCGACCCCGCGCGGCCCGACCCGTCGCGGCCGGATCC
GCTGCGCGGCCGCCGCATCCTCGTGGTCGAGGACGACCCCACGGTGAACGAGGTCGTGTGCCGCTACCTCAAGGCGTCCG
GCTTCCAGGTCGAGACCGTCGCCGACGGCCTCGAGGCCGCGCGCGTCGCCACCGAGCGCATGCCCGACCTCGTCGTGCTC
GACCGCATGCTCCCCGGCCTCGACGGCCTCGAGGTGTGCCGACGGATCCGCGCCCACCACCCCGAGTCGCCCGTCCCCGT
CGTGATGCTGACCGCGCTCGGCCAGGGCGAGGACCGCGTGAACGGCCTCGACGCCGGCGCCGACGACTACCTCGCCAAGC
CCTTCTCCCCGCGCGAGCTCGTGCTCCGGGTCCGCGCCGTGCTCCGCCGGACGGTGCCCGAGCCCGTGCCCGAGCCGCCC
TTCGTCGCGGGGCCGTTCGTGCTCGACCTCGGCGCGCGCGAGATCCACCAGGCGGGCGCCATGCTGTCGCTCACCTCCCG
CGAGTTCGACCTCCTCGCCTTCCTGTTGCGCAACCCGCGCCGCGTCTTCGGGCGCGACGACCTGCTCCGCTCGGTGTGGG
GCTGGGAGATCGGCGACCTCTCCACCGTCACCGTCCACGTGCGGCGCCTGCGGGAGAAGATCGAGGCGGATCCCGCGCAC
CCCGTGCTCCTCGGCACCGTGTGGGGCGTGGGCTACCGCTTCGACCCGGACGCCGCGACGCCCGTGGAGACGCCCGCGCC
CGCCTCGGCCGATGAGGGCGACCTGCCCGCCCCGCCCGCCGGGGGCGACGCGTGA

Protein sequence : 
MSPTYDPARADAGRPDPARPDPSRPDPLRGRRILVVEDDPTVNEVVCRYLKASGFQVETVADGLEAARVATERMPDLVVL
DRMLPGLDGLEVCRRIRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLRRTVPEPVPEPP
FVAGPFVLDLGAREIHQAGAMLSLTSREFDLLAFLLRNPRRVFGRDDLLRSVWGWEIGDLSTVTVHVRRLREKIEADPAH
PVLLGTVWGVGYRFDPDAATPVETPAPASADEGDLPAPPAGGDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 1e-26 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CMN_02293 YP_007686548.1 two-component system response regulator AE000516.2.gene3505. Protein 3e-36 48
CMN_02293 YP_007686548.1 two-component system response regulator CP000034.1.gene3671. Protein 2e-35 43
CMN_02293 YP_007686548.1 two-component system response regulator NC_012469.1.7685629. Protein 1e-27 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CMN_02293 YP_007686548.1 two-component system response regulator VFG1390 Protein 3e-28 46
CMN_02293 YP_007686548.1 two-component system response regulator VFG1389 Protein 1e-22 42
CMN_02293 YP_007686548.1 two-component system response regulator VFG1563 Protein 7e-27 41
CMN_02293 YP_007686548.1 two-component system response regulator VFG1702 Protein 7e-27 41