Gene Information

Name : CMN_01994 (CMN_01994)
Accession : YP_007686262.1
Strain : Clavibacter michiganensis NCPPB 2581
Genome accession: NC_020891
Putative virulence/resistance : Resistance
Product : efflux ABC transporter, ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2102538 - 2103245 bp
Length : 708 bp
Strand : -
Note : Cmm ortholog CMM_2032; Cms ortholog CMS_1201

DNA sequence :
ATGAGCCTGATCCGCCTCGAGCAGGTGACCCGGACTGTCCCGCGTCCGGACGACGAGCCGCTGACGATCCTGCACGGCGT
CGACCTCGACGTGTCCGTGGGCGACCACGTCTCGATCGTGGGCCGCTCCGGATCCGGGAAGTCGACGCTGCTGAACATCG
TCGGCCTGCTCGACACCCCGACGACAGGCGAGGTGTTCCTCGACGACGTGCCCATGGCGCGCGTCTCGGGATCCCGGCGC
GACCGCGCCCGCGGCGGCGACATCGGCTTCATCTTCCAGCAGTTCAACCTGCTGCAGGGCCGGACGGCCCGCGAGAACGT
GATGACCCCGCTGCTCTACTCGACGGGTCGCTCGTTCTGGCGGCGTGCGTCGATCGCGGCGGACATGCTCGAGCGCGTCG
GCCTCGGCCACCGCATCGACGCCATGCCGGAGACGATGTCCGGAGGGGAGCAGCAGCGCGTCGCGATCGCCCGGGCGCTC
GTGCGCTCGCCGCGGCTGATCCTGGCGGACGAGCCCACGGGCGCGCTCGACATCGAGACGGGCGCGACGGTGATGAGCCT
GCTCGCCGAGGTCGCGCACGCGTCCGGTGCGGCGCTCGTCACCATCACGCACGACCCGACCGTCGCGGCCCGCGCGGACC
GGCACCACCGGCTGGAGATGGGCGTGCTCGCGCCCGCCGAGGCCCTCACCCGGGAGCTGCTCGCATGA

Protein sequence :
MSLIRLEQVTRTVPRPDDEPLTILHGVDLDVSVGDHVSIVGRSGSGKSTLLNIVGLLDTPTTGEVFLDDVPMARVSGSRR
DRARGGDIGFIFQQFNLLQGRTARENVMTPLLYSTGRSFWRRASIAADMLERVGLGHRIDAMPETMSGGEQQRVAIARAL
VRSPRLILADEPTGALDIETGATVMSLLAEVAHASGAALVTITHDPTVAARADRHHRLEMGVLAPAEALTRELLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-28 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-28 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 5e-28 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-28 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CMN_01994 YP_007686262.1 efflux ABC transporter, ATP-binding protein NC_012469.1.7686878. Protein 2e-40 44
CMN_01994 YP_007686262.1 efflux ABC transporter, ATP-binding protein CP001581.1.gene598.p Protein 6e-27 42
CMN_01994 YP_007686262.1 efflux ABC transporter, ATP-binding protein NC_008702.1.4606598. Protein 7e-25 42