Gene Information

Name : Clst_0265 (Clst_0265)
Accession : YP_007678387.1
Strain : Clostridium stercorarium DSM 8532
Genome accession: NC_020887
Putative virulence/resistance : Virulence
Product : ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 306382 - 308814 bp
Length : 2433 bp
Strand : +
Note : with chaperone activity/ATP-binding subunit; COG:0542 ATPases with chaperone activity ATP-binding subunit; KO:K03696 ATP-dependent Clp protease ATP-binding subunit ClpC

DNA sequence :
ATGATTTACGGAAGATTTACCCAGAGAGCCGCACAGGCATTAAATCTGGCAAGGGAATGCTCCAACAGCCTTGGGCATAA
TTATATAGGAACCGAGCATATACTTTGGGGACTTGTCAAGGAAGGCGGAGGAATAGCGGCGAACGTGCTGATTTCCAACG
GCGTAACCGCCGACAGGGTGCTGGAAAAGATTTTGTCCATTGTCGGCAGAGGTGACGGAAGCCTTCCGATAACCGGATAT
ACCCCAAGAACAAAAAGGGTTATGGAGCTGGCATATGCTGAAACCAGAAGGATGGGGCAGAATTTCATAGGTACCGAGCA
TATAATGCTGGCCATTCTCCGTGAAGGTGAAAGCGTAGCCGTTCGCATACTTATGGAACTGGGGGTTGACATAAACAAAC
TTTACGACAGCCTTATTACGATGCTTCAGGAAGACACTCCGGCGGCGGTTGTGGCCAATAAGCCGAGGGCCGAGGAAATT
CAGACCCCCACTCTTGATCAGTTTGGGCGGGATCTTACAGCAATGGCAAGAGAGGGTAAGATAGATCCCGTTATAGGAAG
GGATAAGGAAATAGAACGTATAATCCAGATTCTTAGCAGGCGTACAAAAAACAATCCGTGCCTGATTGGCGAGCCCGGCG
TAGGTAAAACGGCCATATGCGAAGGCCTGGCTCAGAAAATCATAGAAGGCAACATCCCCGAAATACTTAAAGGCAAAAGA
GTTGTCGCTTTGGATTTGTCATCGATGGTGGCGGGTGCAAAGTACCGCGGCGAGTTTGAGGAACGCCTGAAGAAATCGAT
AGAAGAAGTGAGGAACGCAGGAAACGTAATCCTGTTTATAGACGAACTTCATACCATTGTAGGTGCGGGTGCCGCGGAAG
GCGCAATTGATGCGTCGAACATTCTGAAACCCCTGCTTGCGAGGGGGGAAATCCAGGTCATAGGTGCAACAACCATTGAC
GAGTACCGTAAGTACATTGAAAAGGATGCGGCGCTTGAACGCCGTTTCCAGCCGATACAGATAGGCGAGCCCACTCAGGA
AGAGGCCATTGAAATTCTGAAAGGTATTCGGGACAAATATGAAGCCCATCACAATGTAAAAATAACTGACAAGGCAATAG
AAGCTGCCGTAAGGCTTTCGGTACGGTATATTACCGACAGATTCCTGCCCGACAAGGCGATTGACCTGATAGACGAGGCG
GCGTCAAAAGTCAGGCTGAAGAGTTTTATAGCGCCTCCCGATTTAAAAGAGCTGGAGCAGAAGATTGAGCAGGTACACAA
AATGAAGGAAGACGCAATAATAAACCAGGAATTTGAAAAGGCCGCGTCATTGAGGGATCAGGAAAATGCCCTTAAGGAAC
AGATGAATTCACTGAAAGAAAAATGGAGAATGAAAAACCAGACAGAAACCCAGTCGGTAACCGAAGAAGAAATAGCCGAG
GTGGTAAGCAGCTGGACCGGAATACCTGTCAGCCGCCTTGCCCAGGAAGAAACAGAAAAGCTTAAGAACCTTGAAAATGT
TCTGCACAAACGGGTAATCGGTCAGGACGAGGCAGTGAAGGCGGTGGCAAAGGCAATACGCAGAGGGCGCGTGGGACTGA
AAGATCCGAAAAGGCCTGTGGGTTCGTTTATTTTCCTCGGACCTACCGGCGTGGGAAAAACAGAGCTGTCGAAAGCCCTT
GCCGAAGCTCTGTTCGGTGACGAATCCCATATGATTCGACTGGATATGTCGGAATATATGGAAAAGCACACCGTCTCAAG
GCTTGTAGGTTCGCCGCCGGGCTATGTCGGATATGAAGAAGGCGGACAGTTAACCGAGAAGGTACGGAGAAAGCCGTATT
CCGTTGTATTGTTCGATGAGATTGAGAAAGCCCACCCGGATGTATTCAACATTCTCCTGCAAATTCTTGACGACGGCAGG
CTTACCGATGCCTCGGGAAGGCTTGTGGATTTCAGGAACACCGTTATTATCATGACGTCAAACATTGGCGCACGGGACAT
AGTTGAACCCAGAAAACTGGGATTCAGTGCGGCTTTGGAAAACGAAGCAAAAGATTACGAAGAAATGAAGAAGAACGTTA
TGAACGAACTGAAAAAGACTTTCAGGCCTGAATTCCTGAACAGGGTGGATGAGCTGATTGTGTTCCATCCGCTTACGAGG
GAAAATATCAACGATATTGCCGGGCTCATGCTGAACGAGGTCGCAAAGAGGCTGAAAAATGTAAATATTACGCTTATAGC
GGATGACCAGGTTAAGGAATTCCTTGCAGAAAAAGGTTATGACAAGGTTTACGGTGCAAGGCCTTTAAGGAGGACAATCC
AAAACCTCGTGGAAGACAGAATTGCTGAAGAAATGCTGGACGGCAAAATACGCGAAGGAGATACGGTTAAAATAGTCTTA
AACAACGACAGGCTGGAATTTGTAAAGGTTTAA

Protein sequence :
MIYGRFTQRAAQALNLARECSNSLGHNYIGTEHILWGLVKEGGGIAANVLISNGVTADRVLEKILSIVGRGDGSLPITGY
TPRTKRVMELAYAETRRMGQNFIGTEHIMLAILREGESVAVRILMELGVDINKLYDSLITMLQEDTPAAVVANKPRAEEI
QTPTLDQFGRDLTAMAREGKIDPVIGRDKEIERIIQILSRRTKNNPCLIGEPGVGKTAICEGLAQKIIEGNIPEILKGKR
VVALDLSSMVAGAKYRGEFEERLKKSIEEVRNAGNVILFIDELHTIVGAGAAEGAIDASNILKPLLARGEIQVIGATTID
EYRKYIEKDAALERRFQPIQIGEPTQEEAIEILKGIRDKYEAHHNVKITDKAIEAAVRLSVRYITDRFLPDKAIDLIDEA
ASKVRLKSFIAPPDLKELEQKIEQVHKMKEDAIINQEFEKAASLRDQENALKEQMNSLKEKWRMKNQTETQSVTEEEIAE
VVSSWTGIPVSRLAQEETEKLKNLENVLHKRVIGQDEAVKAVAKAIRRGRVGLKDPKRPVGSFIFLGPTGVGKTELSKAL
AEALFGDESHMIRLDMSEYMEKHTVSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLFDEIEKAHPDVFNILLQILDDGR
LTDASGRLVDFRNTVIIMTSNIGARDIVEPRKLGFSAALENEAKDYEEMKKNVMNELKKTFRPEFLNRVDELIVFHPLTR
ENINDIAGLMLNEVAKRLKNVNITLIADDQVKEFLAEKGYDKVYGARPLRRTIQNLVEDRIAEEMLDGKIREGDTVKIVL
NNDRLEFVKV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 54
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 3e-101 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clst_0265 YP_007678387.1 ATPase VFG0079 Protein 0.0 60
Clst_0265 YP_007678387.1 ATPase VFG0080 Protein 7e-163 52