Gene Information

Name : Clst_2629 (Clst_2629)
Accession : YP_007680656.1
Strain : Clostridium stercorarium DSM 8532
Genome accession: NC_020887
Putative virulence/resistance : Resistance
Product : ABC transporter ATPase subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2926731 - 2927408 bp
Length : 678 bp
Strand : -
Note : antimicrobial peptide transport system; COG:1136 ABC-type antimicrobial peptide transport system ATPase component; KEGG_module M00258:Putative ABC transport system; KO:K02003 putative ABC transport system ATP-binding protein

DNA sequence :
ATGAGTGAAATTGTTGTAATGAAGGATGTGTGTAAAAGCTATTATTCCGGCAATGAAGAGGTAAAGGTTCTTAAGAATAT
AAACCTTACCGTGAAAAAAGGCGAGTTTGTTTCGGTTCTTGGACCTTCGGGTTCGGGAAAAACAACCCTGATGAATATTA
TAGGATGCCTTGACGTGCCCACTTCGGGAAAGTATCTTCTCTGCGGGAAAGACGTTTCGGAAATGGATGAAACAGAACTT
GCCGCGGTAAGAAACAGAGAGATAGGTTTTGTTTTTCAGAATTTCTTTCTCCTTCCGAGGCTGACCGCGATACAGAATGT
TGAACTTCCGCTTGTTTATTCAAACATTCCTCAGAAAGAACGCAGAAGAAAAGCCGAGAAAATGCTTTACCGCGTGGGTT
TGGGAGATAAAATGCACAATCTCCCCAATCAGCTTTCGGGCGGGCAGCAGCAGCGGGTGGCCATTGCAAGGGCTCTTGTA
ACAGAGCCTTCGATTATTCTTGCCGATGAGCCGACAGGGGCCCTGGATCAAAAAACAGGGGCGGGAATAATTGAGTATTT
TGAGAGATTGAACGAAGAAGGAAAAACAATAATAATGATTACTCATGACATTAATGTCGCCGGACGTGCAAAAAGAACGA
TAAATATCCTTGACGGCGTACTTACGGATGGTGGATGA

Protein sequence :
MSEIVVMKDVCKSYYSGNEEVKVLKNINLTVKKGEFVSVLGPSGSGKTTLMNIIGCLDVPTSGKYLLCGKDVSEMDETEL
AAVRNREIGFVFQNFFLLPRLTAIQNVELPLVYSNIPQKERRRKAEKMLYRVGLGDKMHNLPNQLSGGQQQRVAIARALV
TEPSIILADEPTGALDQKTGAGIIEYFERLNEEGKTIIMITHDINVAGRAKRTINILDGVLTDGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 7e-32 42
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 2e-31 41
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-32 41
opuBA NP_938494.1 choline transport system ATP-binding protein Not tested Not named Protein 5e-24 41
opuBA YP_005124363.1 choline transport system ATP-binding protein Not tested Not named Protein 4e-24 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clst_2629 YP_007680656.1 ABC transporter ATPase subunit NC_012469.1.7686878. Protein 3e-63 58
Clst_2629 YP_007680656.1 ABC transporter ATPase subunit CP001581.1.gene798.p Protein 7e-44 48
Clst_2629 YP_007680656.1 ABC transporter ATPase subunit CP001581.1.gene598.p Protein 1e-39 48
Clst_2629 YP_007680656.1 ABC transporter ATPase subunit NC_008702.1.4606598. Protein 4e-44 44