Gene Information

Name : Clst_2126 (Clst_2126)
Accession : YP_007680172.1
Strain : Clostridium stercorarium DSM 8532
Genome accession: NC_020887
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2408985 - 2409653 bp
Length : 669 bp
Strand : +
Note : consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; COG:0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; KEGG_module M00434:PhoR-PhoB two-component regulatory system; KO

DNA sequence : 
ATGATTTACTGCGTGGAAGATGATCCGAATATAAGGGAACTGGTCATTTATGCGCTTAAAACAAGCGGATTTGAAGCCAA
AGGTTTCCCCGACGCAAAAAACTTTTTTGAGGAACTTAAAAAGAAGCTTCCGTCCTTGATCCTGCTGGATATAATGCTCC
CGGGCACCGACGGACTAACGGTTTTAAAAATGCTTAAAGACAACGCCGTTACAAAGGACATTCCTGTTATCATGCTCACT
GCAAAAGGGACAGAGTTTGACATAGTGCAAGGTCTTGACCTTGGCGCCGACGACTATATCACGAAACCGTTCGGCGTGCT
GGAACTTATCTCGCGGATAAAGTCGGTATTGAGAAGAGTGGAACCAAAGACCGACCAAAGCATATTAAAAGTCGGGGATA
TAACCATCGATACCGGAAGACACATGGTAACGGCAGGCAATAATGAAATAAAGCTTACATCGAAGGAATTTCAGCTGCTT
TACCTTTTAATGTCCAACGCCGGTATTGTGCTGACGCGGGACATGCTTCTGGACAAAATATGGGGATTTGATTTTGACTG
CGAAACCCGGACTTTGGACGTACATATCCGTTCCCTGAGAAAAAAACTCGGCGAGCATGGCAGAAAAATTGAAACGGTCC
GCGGGATCGGATACAGGATGGGAGTATGA

Protein sequence : 
MIYCVEDDPNIRELVIYALKTSGFEAKGFPDAKNFFEELKKKLPSLILLDIMLPGTDGLTVLKMLKDNAVTKDIPVIMLT
AKGTEFDIVQGLDLGADDYITKPFGVLELISRIKSVLRRVEPKTDQSILKVGDITIDTGRHMVTAGNNEIKLTSKEFQLL
YLLMSNAGIVLTRDMLLDKIWGFDFDCETRTLDVHIRSLRKKLGEHGRKIETVRGIGYRMGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-29 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-28 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clst_2126 YP_007680172.1 response regulator NC_012469.1.7686381. Protein 2e-35 41
Clst_2126 YP_007680172.1 response regulator NC_002952.2859905.p0 Protein 3e-37 41
Clst_2126 YP_007680172.1 response regulator NC_002951.3237708.p0 Protein 4e-37 41
Clst_2126 YP_007680172.1 response regulator NC_002758.1121668.p0 Protein 4e-37 41
Clst_2126 YP_007680172.1 response regulator NC_009641.5332272.p0 Protein 4e-37 41
Clst_2126 YP_007680172.1 response regulator NC_013450.8614421.p0 Protein 4e-37 41
Clst_2126 YP_007680172.1 response regulator NC_007793.3914279.p0 Protein 4e-37 41
Clst_2126 YP_007680172.1 response regulator NC_003923.1003749.p0 Protein 4e-37 41
Clst_2126 YP_007680172.1 response regulator NC_007622.3794472.p0 Protein 3e-37 41
Clst_2126 YP_007680172.1 response regulator NC_002745.1124361.p0 Protein 4e-37 41
Clst_2126 YP_007680172.1 response regulator NC_009782.5559369.p0 Protein 4e-37 41
Clst_2126 YP_007680172.1 response regulator CP001918.1.gene5135. Protein 2e-26 41
Clst_2126 YP_007680172.1 response regulator BAC0347 Protein 2e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clst_2126 YP_007680172.1 response regulator VFG0596 Protein 4e-30 44
Clst_2126 YP_007680172.1 response regulator VFG0473 Protein 3e-29 41