Gene Information

Name : Clst_0159 (Clst_0159)
Accession : YP_007678288.1
Strain : Clostridium stercorarium DSM 8532
Genome accession: NC_020887
Putative virulence/resistance : Virulence
Product : nucleotide sugar dehydrogenase
Function : -
COG functional category : -
COG ID : -
EC number : 1.1.1.1
Position : 178880 - 180190 bp
Length : 1311 bp
Strand : +
Note : COG:0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; KO:K02474 UDP-N-acetyl-D-galactosamine dehydrogenase

DNA sequence :
ATGGGAATATATAATGATCTTTTGGATCGTAAAAAAAACCTTGCCGTTGTAGGGCTTGGATATGTGGGAATGCCCCTTGC
GATAGAGTTTGGAAAGAAAATAAACGTTATAGGTTTTGATACAGATAAAAGGAAGATTGAAAATTATCTGAACGGAATAG
ACGTTACCGGGGAAGTGGGAAACGAGGCGCTGAAGAACACAACCGTCGAGTTTTCCAGCGACGAAGGCGTTTTAAGCCGG
GCGTCGTTTTATATAGTAACAGTACCTACTCCGGTGGCACAGGACAAAACACCGGACCTTAACCCGCTGATTGGGGCAAG
CACCTCAGTCGGAAGGCATCTTAAGAAAGGGGATTATGTTGTATACGAATCCACCGTTTACCCCGGTGTTACCGAAGAAA
TATGCATACCCGTGCTGGAAAGGGAATCTGGGCTTAAGGCAGGTACCGATTTTAAGGTGGGGTATTCCCCCGAGCGGATA
AACCCCGGCGACAAGGTCCATACCGTAACAAAGGTTTTGAAGATTGTTTCGGGAATTGACGAGGAGGCGCTGGAGGAAAT
AGCCAAGGTTTATGGGATAATTGTCGAGGCCGGGATTTACAGAGCCGAAAGCATAAAGGTCGCAGAAGCTGCAAAGGTTA
TTGAAAATACTCAGCGGGACATTAATATTGCTTTCATGAATGAGCTTTCGATTATCTTTAACAAAATGAACATAAATACG
AAAGCCGTTCTGGAAGCTGCCGGAACAAAGTGGAATTTTCTGAAGTTTACACCGGGGCTTGTGGGCGGCCACTGTATCGG
CGTGGATCCCTATTATTTGGCCTATAAAGCCCAGCAACTGGGTTATCACCCCGAAGTTATCCTTGCCGGCAGAAGAATTA
ACGACATGATGGGTAAATACGTGGCCGAAAATACCGTAAAACAGCTTATTAAGGCCGATAAACAGATCAAGGGCGCAAGG
GTGTTCATTATGGGGCTTACGTTTAAGGAGGACGTACCCGATACAAGGAATACGAAAGTAGTGGATATAGTTCATGAGCT
TCAGGAATACGGCATTGAGGTGTTTGTTTCGGACTACATGGCAAACAGCGAAGATGTGCTTGACGAATACGGGATAAAAC
TTGCGGAATATGACGATGTAAACAATGTGGATGCGGTTATAATGGCGGTGTGCCATAAAAAGTACAGGGAAATCACACTG
GACATGCTTGAGAAAAAGTACTCCAAAGGAACAAAGGTTCTTATCGATGTAAAAGGAATGTTCTCTCCGAAAGAGGCTGC
TGAAAAAGGGTATTTATACTGGAGCCTGTAA

Protein sequence :
MGIYNDLLDRKKNLAVVGLGYVGMPLAIEFGKKINVIGFDTDKRKIENYLNGIDVTGEVGNEALKNTTVEFSSDEGVLSR
ASFYIVTVPTPVAQDKTPDLNPLIGASTSVGRHLKKGDYVVYESTVYPGVTEEICIPVLERESGLKAGTDFKVGYSPERI
NPGDKVHTVTKVLKIVSGIDEEALEEIAKVYGIIVEAGIYRAESIKVAEAAKVIENTQRDINIAFMNELSIIFNKMNINT
KAVLEAAGTKWNFLKFTPGLVGGHCIGVDPYYLAYKAQQLGYHPEVILAGRRINDMMGKYVAENTVKQLIKADKQIKGAR
VFIMGLTFKEDVPDTRNTKVVDIVHELQEYGIEVFVSDYMANSEDVLDEYGIKLAEYDDVNNVDAVIMAVCHKKYREITL
DMLEKKYSKGTKVLIDVKGMFSPKEAAEKGYLYWSL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 2e-107 55
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 4e-98 53
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 4e-98 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clst_0159 YP_007678288.1 nucleotide sugar dehydrogenase VFG0431 Protein 2e-98 53