Gene Information

Name : Clst_1122 (Clst_1122)
Accession : YP_007679208.1
Strain : Clostridium stercorarium DSM 8532
Genome accession: NC_020887
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1273436 - 1274122 bp
Length : 687 bp
Strand : +
Note : consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; COG:0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGAATAATAAAACCCGGATTCTGATTGTGGATGATGATATTAACATATGCCAGCTTTTAAAACTGTATCTTGACAAGGA
AGGTTACGAAAACATTGCCGTACATGACGGAAAACAGGCTCTTGAAGTATTCAGGGAGTTTACGCCCAATCTTGTAATTC
TTGACATAATGCTTCCCGGCATGGATGGATGGCAGGTATGCAGGGAGATACGCAAATTCAGTAATATACCTATAATTATG
CTTTCCGCAAGGGATGAAACTTTCGACAAGGTGCTCGGGCTTGAACTGGGCGCAGACGACTATGTTGCGAAACCTTTTGA
ACCCAAGGAACTTATTGCAAGAATAAAAGCGGTATTAAGAAGATATGACAGGGTGGATAATTCACAGGAACAGCTAATTT
TCCCCGGCCTTGTTGTTAATAAGTCTAATTACACCATCCGTGTTCACGGAAAGGAAATGGAGCTGCCGCCAAAGGAGCTG
GAACTTCTTTATTTCCTTGCGTCCAACCCTAATAAGGTTTTTACAAGGGAGCAGCTGCTGGAAAATGTCTGGGGGTTTGA
CTTTTACGGGGATACCCGTACGGTGGATGTGCATGTGAAACGGCTCAGGGAAAAGCTTGAACCGCCTGATCCCCACTGGC
AGCTGAAAACAGTTTGGGGTGTAGGCTATAAGTTTGAGGTGAAATGA

Protein sequence : 
MNNKTRILIVDDDINICQLLKLYLDKEGYENIAVHDGKQALEVFREFTPNLVILDIMLPGMDGWQVCREIRKFSNIPIIM
LSARDETFDKVLGLELGADDYVAKPFEPKELIARIKAVLRRYDRVDNSQEQLIFPGLVVNKSNYTIRVHGKEMELPPKEL
ELLYFLASNPNKVFTREQLLENVWGFDFYGDTRTVDVHVKRLREKLEPPDPHWQLKTVWGVGYKFEVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 1e-32 43
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 3e-33 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clst_1122 YP_007679208.1 response regulator NC_012469.1.7685629. Protein 3e-46 50
Clst_1122 YP_007679208.1 response regulator AE000516.2.gene3505. Protein 6e-40 49
Clst_1122 YP_007679208.1 response regulator AF155139.2.orf0.gene Protein 2e-43 48
Clst_1122 YP_007679208.1 response regulator FJ349556.1.orf0.gene Protein 1e-43 45
Clst_1122 YP_007679208.1 response regulator NC_012469.1.7686381. Protein 2e-36 45
Clst_1122 YP_007679208.1 response regulator NC_002952.2859905.p0 Protein 9e-44 45
Clst_1122 YP_007679208.1 response regulator NC_002745.1124361.p0 Protein 1e-43 45
Clst_1122 YP_007679208.1 response regulator NC_009782.5559369.p0 Protein 1e-43 45
Clst_1122 YP_007679208.1 response regulator NC_002951.3237708.p0 Protein 1e-43 45
Clst_1122 YP_007679208.1 response regulator NC_003923.1003749.p0 Protein 1e-43 45
Clst_1122 YP_007679208.1 response regulator NC_002758.1121668.p0 Protein 1e-43 45
Clst_1122 YP_007679208.1 response regulator NC_007622.3794472.p0 Protein 8e-44 45
Clst_1122 YP_007679208.1 response regulator NC_009641.5332272.p0 Protein 1e-43 45
Clst_1122 YP_007679208.1 response regulator NC_013450.8614421.p0 Protein 1e-43 45
Clst_1122 YP_007679208.1 response regulator NC_007793.3914279.p0 Protein 1e-43 45
Clst_1122 YP_007679208.1 response regulator AM180355.1.gene1830. Protein 1e-36 44
Clst_1122 YP_007679208.1 response regulator BAC0039 Protein 8e-39 44
Clst_1122 YP_007679208.1 response regulator BAC0596 Protein 6e-38 44
Clst_1122 YP_007679208.1 response regulator CP000034.1.gene2186. Protein 8e-39 44
Clst_1122 YP_007679208.1 response regulator NC_002695.1.916589.p Protein 6e-39 44
Clst_1122 YP_007679208.1 response regulator CP001138.1.gene2239. Protein 6e-38 44
Clst_1122 YP_007679208.1 response regulator NC_002758.1121390.p0 Protein 6e-38 43
Clst_1122 YP_007679208.1 response regulator NC_010079.5776364.p0 Protein 6e-38 43
Clst_1122 YP_007679208.1 response regulator AE015929.1.gene1106. Protein 3e-34 43
Clst_1122 YP_007679208.1 response regulator NC_002952.2859858.p0 Protein 6e-38 43
Clst_1122 YP_007679208.1 response regulator NC_007622.3794948.p0 Protein 6e-38 43
Clst_1122 YP_007679208.1 response regulator NC_003923.1003417.p0 Protein 6e-38 43
Clst_1122 YP_007679208.1 response regulator NC_013450.8614146.p0 Protein 6e-38 43
Clst_1122 YP_007679208.1 response regulator NC_002951.3238224.p0 Protein 6e-38 43
Clst_1122 YP_007679208.1 response regulator NC_007793.3914065.p0 Protein 6e-38 43
Clst_1122 YP_007679208.1 response regulator DQ212986.1.gene4.p01 Protein 3e-36 43
Clst_1122 YP_007679208.1 response regulator NC_014475.1.orf0.gen Protein 2e-36 43
Clst_1122 YP_007679208.1 response regulator NC_005054.2598277.p0 Protein 2e-36 43
Clst_1122 YP_007679208.1 response regulator HE999704.1.gene2815. Protein 2e-42 43
Clst_1122 YP_007679208.1 response regulator CP001918.1.gene3444. Protein 4e-37 43
Clst_1122 YP_007679208.1 response regulator CP000647.1.gene2531. Protein 5e-38 43
Clst_1122 YP_007679208.1 response regulator AE016830.1.gene1681. Protein 4e-38 42
Clst_1122 YP_007679208.1 response regulator HE999704.1.gene1528. Protein 4e-29 42
Clst_1122 YP_007679208.1 response regulator NC_011595.7057856.p0 Protein 2e-36 41
Clst_1122 YP_007679208.1 response regulator NC_010410.6002989.p0 Protein 2e-36 41
Clst_1122 YP_007679208.1 response regulator NC_010400.5986590.p0 Protein 9e-36 41
Clst_1122 YP_007679208.1 response regulator CP001138.1.gene4273. Protein 2e-26 41
Clst_1122 YP_007679208.1 response regulator NC_002695.1.915041.p Protein 5e-27 41
Clst_1122 YP_007679208.1 response regulator CP000034.1.gene3834. Protein 5e-27 41
Clst_1122 YP_007679208.1 response regulator CP001918.1.gene5135. Protein 7e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clst_1122 YP_007679208.1 response regulator VFG1702 Protein 6e-33 43
Clst_1122 YP_007679208.1 response regulator VFG1389 Protein 6e-27 43
Clst_1122 YP_007679208.1 response regulator VFG1563 Protein 2e-33 42