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Name : D648_80 (D648_80) Accession : YP_007667521.1 Strain : Mannheimia haemolytica USDA-ARS-USMARC-185 Genome accession: NC_020834 Putative virulence/resistance : Virulence Product : HexC Function : - COG functional category : - COG ID : - EC number : - Position : 10864 - 11967 bp Length : 1104 bp Strand : + Note : Vi polysaccharide export inner membrane protein VexD PRK15178; HexC of Proteobacteria UniRef RepID=Q9CMN7_PASMU DNA sequence : ATGTCAAAGAAGAAAAAACATTTTTTAGCTAACCCTTTGTTGTGGCTAACTGTAATTATTCCAACTGCTTGTTCTGGAAT TTATTATTCCTTATTTGCCTCTGATATTTATGTTTCAGAATCTAGCTTTGTGGTTCGTTCGCCCAATAATCAATCGAGCT TAACAGGCGTTGGTGCTTTATTGCAAAACTCCGGTTTCGCCCGTTCTCAAGATGATACCTATTCAGTTCAGGAATATATG CGTTCCCGTACCGCATTAGAACAACTTGAAGCAGAAATTCCGGTAAAGCGTTTTTATAGTGAGCAAGGTGATTTACTAAG CAAATTTAACGGTTTAGGATTTAACGATACCCAAGAAGCATTTTATCGTTATTTTAAAGAACGTCTGAATATTGATGTCG ATTCTATTTCAGGTATTGCAACGCTACGCGTTCGTGCTTTTAATGCAGAAGAAGGACAAAAAATTAACGAGAATTTATTA CAGCAAGGGGAAACATTAATTAACCGCCTTAATGAAAGAGCAAGACAAGATACGGTTGAGTTTGCAGAAGAGCGTGTAAA AGAGGCCGAAAAAGACGTCAATAATACTGCGTTAGCATTAAGCCAATATCGAACTAAAAATAAAATTTATGATTTACCGG CACAATCCAGCGTTCAGCTCTCATTAATTTCTACCTTAAAAAGTGAATTAATTCGGGTAGAAACACAATTAGCACAATTG AAGTCAATTACGCCGGATAATCCTCAGGTAGCCGCATTACAAATGCGTCAAAAAAGTTTGAAAAAAGAAATTGATGATCA GTCCAAACAACTTGCAGGAGGTAATACTTCTGTAGCAACGCAAACTGCTGAATATCAACGTTTGGTTCTTGCTAACGAAT TAGCTCAGCAACAACTTGCAGCAGCAATGACTTCATTACAAAATACACGAGGTGAAGCTGATCGCCAACAACTTTATTTA GAGGTAATTGGTAGGCCAAGCAAACCAGATTGGGCATTAGAACCCTACAGAATTTATAATATTATATCAACTTTTTTTAT CGGCTTAATTCTATTTGGAGTATTAAGTTTGTTACTAGCAAGTATTAGAGAGCATAAAAACTAA Protein sequence : MSKKKKHFLANPLLWLTVIIPTACSGIYYSLFASDIYVSESSFVVRSPNNQSSLTGVGALLQNSGFARSQDDTYSVQEYM RSRTALEQLEAEIPVKRFYSEQGDLLSKFNGLGFNDTQEAFYRYFKERLNIDVDSISGIATLRVRAFNAEEGQKINENLL QQGETLINRLNERARQDTVEFAEERVKEAEKDVNNTALALSQYRTKNKIYDLPAQSSVQLSLISTLKSELIRVETQLAQL KSITPDNPQVAALQMRQKSLKKEIDDQSKQLAGGNTSVATQTAEYQRLVLANELAQQQLAAAMTSLQNTRGEADRQQLYL EVIGRPSKPDWALEPYRIYNIISTFFIGLILFGVLSLLLASIREHKN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ctrB | NP_273136.1 | capsule polysaccharide export inner-membrane protein | Not tested | IHT-A | Protein | 1e-86 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| D648_80 | YP_007667521.1 | HexC | VFG0686 | Protein | 9e-117 | 81 |
| D648_80 | YP_007667521.1 | HexC | VFG0698 | Protein | 9e-117 | 81 |
| D648_80 | YP_007667521.1 | HexC | VFG0256 | Protein | 4e-87 | 57 |
