Gene Information

Name : D648_70 (D648_70)
Accession : YP_007667520.1
Strain : Mannheimia haemolytica USDA-ARS-USMARC-185
Genome accession: NC_020834
Putative virulence/resistance : Virulence
Product : Capsule polysaccharide export protein BexD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 9608 - 10792 bp
Length : 1185 bp
Strand : +
Note : Periplasmic protein involved in polysaccharide export, contains SLBB domain of b-grasp fold COG1596; Capsule polysaccharide export protein BexD of Proteobacteria UniRef RepID=BEXD_HAEIF

DNA sequence : 
ATGAAACAAAAAAAATTAAATACTACATTATTATTTATAACATTATCATTAATTTCAGCCTGCTCTAGCCTACCAACGTC
CGGCCCAAGCTATAGCGAAATCTTAGCAAGTAATGAAAATACAGCTGAAACGCAGTTGCCTGAAGTCAATTTAATCAAGT
TAGATAACATCACCGTACAAAACTTATACCAAGAGCAACAATCTCAACGTTTTTCAGGATTTGATGGCTCAATGGGTGTG
GGTGGTTATGCTGGAACAGTTAATGTAGGCGATATATTAGAAATATCCATTTGGGAAGCGCCACCTGCCGTGCTATTTGG
TGGAACATTTAGTGCTGAAGGGCAAGGTAATGGGCATTTAACCCAATTACCTCAGCAAATGGTGAACAAAAATGGAACGG
TAACTGTGCCTTTTATCGGTAATATTAAAGTTGCTGGAAAAACACCTGAAGTAATTCAGAATCAAATTGTCGGAGCATTG
AGCCGTAAAGCTAATCAACCTCAAGCATTAGTTCGTATTGCGAATAACTTGTCGTCTGATGTTACGGTTATCCGCCAAGG
AAATAGCATTCGTATGCCATTAAGTGCCAATAATGAGCGTATTTTAGATGCAGTTGCGGCAGTAGGTGGTACAAGCGAAA
ATATTGAAGATGTAACAGTTCGTTTAACACGTGGAAATAAAGTGCGTTCAATGGCGTTTGAAACATTAATTGCTGACCCC
TCACAAAATATTACATTACGTTCAGGTGATGTTATTGCTTTAATGAATACTCCTTATAGCTTTACCGGATTAGGAGCAGT
AGGTAATAATCAACAAATGCGTTTTTCAAGTAAAGGCATTACCCTTGCTGAAGCTATCGGTAAAATGGGAGGATTAATTG
ATGAGCGTTCAGACCCTCGTGGTGTGTTCGTATTCCGCCATATTCCTTTCACCCAGTTAGACTATACTAGTCAAGCTCAT
TGGCGAGAAAAAGGCTATTACGAGGGAATGGACATTCCAACCGTTTATCAGGTAAATTTATTAGAACCACAATCAATTTT
TTTATTACAGCGTTTCCCTATTCAAGATAAAGATATTGTGTATGTGTCGAATGCTCCACTGTCTGAATTTCAAAAATTCT
TGAGAATGATTTTCTCCATTACAACGCCAATTACAGGTACAGCTAATACAATTAGAGCATACTAA

Protein sequence : 
MKQKKLNTTLLFITLSLISACSSLPTSGPSYSEILASNENTAETQLPEVNLIKLDNITVQNLYQEQQSQRFSGFDGSMGV
GGYAGTVNVGDILEISIWEAPPAVLFGGTFSAEGQGNGHLTQLPQQMVNKNGTVTVPFIGNIKVAGKTPEVIQNQIVGAL
SRKANQPQALVRIANNLSSDVTVIRQGNSIRMPLSANNERILDAVAAVGGTSENIEDVTVRLTRGNKVRSMAFETLIADP
SQNITLRSGDVIALMNTPYSFTGLGAVGNNQQMRFSSKGITLAEAIGKMGGLIDERSDPRGVFVFRHIPFTQLDYTSQAH
WREKGYYEGMDIPTVYQVNLLEPQSIFLLQRFPIQDKDIVYVSNAPLSEFQKFLRMIFSITTPITGTANTIRAY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrA NP_273135.1 capsule polysaccharide export outer membrane protein Not tested IHT-A Protein 4e-96 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
D648_70 YP_007667520.1 Capsule polysaccharide export protein BexD VFG0699 Protein 1e-141 74
D648_70 YP_007667520.1 Capsule polysaccharide export protein BexD VFG0687 Protein 1e-141 74
D648_70 YP_007667520.1 Capsule polysaccharide export protein BexD VFG0255 Protein 2e-96 53