Gene Information

Name : D648_5440 (D648_5440)
Accession : YP_007668056.1
Strain : Mannheimia haemolytica USDA-ARS-USMARC-185
Genome accession: NC_020834
Putative virulence/resistance : Virulence
Product : periplasmic iron-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 549218 - 550114 bp
Length : 897 bp
Strand : -
Note : Uncharacterized periplasmic iron-binding protein HI_0362 of Proteobacteria UniRef RepID=Y362_HAEIN

DNA sequence : 
ATGAAACTATCAACAATTAAAAAAGCATTGGTATTAACCTTTGGTTTAAGTGCAGCGATGGCAATGGCAGAGCCGTTTAA
AGTAGTTACCACTTTTACCGTGATTCAAGATATTGCACAAAATGTCGCCGGCGATAAAGCCACTGTGGAATCCATTACTA
AACCGGGTGCTGAAATTCACGATTATCAACCAACACCAAAAGACATTGTAAAAGCTCAAAAGGCAGACTTAGTGTTATGG
AACGGTATGAACCTTGAGCGTTGGTTTGAACGTTTCTTTGAAAATGTAAAAGGTAAACCGGCGGTTGTCGTCACCGAAGG
CATCACCCCAATGCCGATTACCGAAGGTGAATATAAAAATCTACCAAATCCGCACGCTTGGATGTCCACCGATAACGCAT
TAATTTACATTGAAAATATTCGTGCGGCTTTAGTAAAATATGACCCACAAAACGCAGACACCTATAATGCCAATGCAAAA
GCCTATGCTGAAAAAGTAAAAGGTATTGCTGAGCCACTCCGCCAACGTTTAGCTTTTATTCCTGAGCAGCAACGTTGGTT
AGTAACCAGTGAAGGGGCATTTAGCTATTTAGCGAAAGACTACAACTTAAAAGAACTTTATTTATGGGCAATCAATGCGG
AAGAGCAAGGTTCGCCAAAACAAGTGAAAAAAGTGATTGATGGTGTAAAAGCCAACAAAATCCCTGTTGTGTTTAGCGAA
AGTACCGTTTCCGACAAACCGGCAAAACAAGTGGCGAAAGAAACCGGTGCATTATACGGTGGCGTAATTTATGTGGATTC
ACTTTCAGAGAAAGATGGTCCGGTTCCAACCTATTTAGATTTGCTTAAAGTGACTATCGGCACCATTGTCGAAGGGTTCG
AACGAAGCAAAAAATAA

Protein sequence : 
MKLSTIKKALVLTFGLSAAMAMAEPFKVVTTFTVIQDIAQNVAGDKATVESITKPGAEIHDYQPTPKDIVKAQKADLVLW
NGMNLERWFERFFENVKGKPAVVVTEGITPMPITEGEYKNLPNPHAWMSTDNALIYIENIRAALVKYDPQNADTYNANAK
AYAEKVKGIAEPLRQRLAFIPEQQRWLVTSEGAFSYLAKDYNLKELYLWAINAEEQGSPKQVKKVIDGVKANKIPVVFSE
STVSDKPAKQVAKETGALYGGVIYVDSLSEKDGPVPTYLDLLKVTIGTIVEGFERSKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 1e-92 66
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 1e-92 66
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 1e-92 66
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 1e-92 66
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-93 65

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
D648_5440 YP_007668056.1 periplasmic iron-binding protein BAC0439 Protein 2e-98 73
D648_5440 YP_007668056.1 periplasmic iron-binding protein BAC0349 Protein 6e-93 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
D648_5440 YP_007668056.1 periplasmic iron-binding protein VFG0525 Protein 6e-93 66