Gene Information

Name : D648_5420 (D648_5420)
Accession : YP_007668054.1
Strain : Mannheimia haemolytica USDA-ARS-USMARC-185
Genome accession: NC_020834
Putative virulence/resistance : Virulence
Product : Chelated iron transport system membrane protein yfeD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 547596 - 548405 bp
Length : 810 bp
Strand : +
Note : Chelated iron transport system membrane protein yfeD of Gammaproteobacteria UniRef RepID=D3VD14_XENNA

DNA sequence : 
ATGCTTAATTGGATTTTAGAGCCGTTGCAATTTGAATTTATGCAAATTGCGTTAATTACCGCAATTTTAGTTGCTGGCGT
GAGTGCGGTTTTATCTTGCTATCTGGTGCTGAAAGGCTGGTCTTTAATGGGCGATGCAATTTCGCACGCTGTTCTGCCCG
GTGTGGTGATTTCCTCACTTGCCGGGTTACCACTCTCAATAGGGGCGTTTTTTTCAGGATTAGGCTGTGCCTTATCGGTG
GGCTATTTAAAAGAAAATAGTCGCTTGAAAGAAGACACGGTAATGGGGATTGTGTTTTCAGGTATGTTTGCCTTTGGGAT
CTTGCTGTTTACCGCCTTTAATACCGGTGAGCATTTAACCCATATTTTATTTGGTAATCTATTAGGCGTAACCAAAAGCG
ATTTGCTTCAGACTTTACTCATAAGCCTCTTTACCTTTGTGGTGATGGTGGCGAAACGCAAAGACTTCTTGCTCTATTGC
TTTGATGTTAATCAAGCCAAAGTAGCAGGCTTACCGGTTAGATTATTGCATTATGGTTTACTTTCCTTGCTTGCTTTAAC
TATTATCAGTGCAATGCAAGTGGTGGGCGTGATTTTAGTGGTGGCAATGTTGATTACCCCGGGGATCACTGCTTACCTGC
TGACTAAGCGGTTTGATAGTATGTTACTGATTGCCTTAGGCGTTGCGATATTTTCATCGGTATTCGGCACGTTGCTTAGC
TACCATATTGATGCCGCAACAGGGCCGACGATTATTCTCGTGCAAGCGGCCATTTTTTTCCTCAGTTTTGCATATTCTAA
GATTCATTGA

Protein sequence : 
MLNWILEPLQFEFMQIALITAILVAGVSAVLSCYLVLKGWSLMGDAISHAVLPGVVISSLAGLPLSIGAFFSGLGCALSV
GYLKENSRLKEDTVMGIVFSGMFAFGILLFTAFNTGEHLTHILFGNLLGVTKSDLLQTLLISLFTFVVMVAKRKDFLLYC
FDVNQAKVAGLPVRLLHYGLLSLLALTIISAMQVVGVILVVAMLITPGITAYLLTKRFDSMLLIALGVAIFSSVFGTLLS
YHIDAATGPTIILVQAAIFFLSFAYSKIH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-51 50
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-51 50
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 9e-52 50
sitD NP_461785.1 permease Virulence SPI-1 Protein 5e-52 50
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 3e-52 50
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 7e-32 43
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 1e-31 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
D648_5420 YP_007668054.1 Chelated iron transport system membrane protein yfeD BAC0442 Protein 3e-69 61
D648_5420 YP_007668054.1 Chelated iron transport system membrane protein yfeD BAC0352 Protein 2e-52 50
D648_5420 YP_007668054.1 Chelated iron transport system membrane protein yfeD BAC0441 Protein 4e-40 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
D648_5420 YP_007668054.1 Chelated iron transport system membrane protein yfeD VFG0528 Protein 2e-52 50