Gene Information

Name : D648_5410 (D648_5410)
Accession : YP_007668053.1
Strain : Mannheimia haemolytica USDA-ARS-USMARC-185
Genome accession: NC_020834
Putative virulence/resistance : Virulence
Product : iron transport system membrane protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 546743 - 547603 bp
Length : 861 bp
Strand : +
Note : Probable iron transport system membrane protein HI_0360 of Bacteria UniRef RepID=Y360_HAEIN

DNA sequence : 
ATGCTTGATCTTTTATTAGAGCCTTTTACCTACAACTATATGCAAAAAGCGATTTTTGTCAGTATGGGCGTGGGGTTAGT
TTGTGCTTTTCTTTCCGCCTTTTTGATGTTAAAAGGCTGGTCTTTGATTGGTGATGCCTTATCACACGCTGTAGTGCCAG
GTGTTGCCATCGCTTATGCACTAAAATTGCCCTACGCCTTTGGTGCGTTTTTTTCCGGGATTTTGGCGGCATTATCGATT
CTTTGGGTAAAAAGCCTGACGAAAATTAAAGAAGATGCGGTTATCGGCTTTATTTTCACGACTTTTTTTGCGCTTGGTAT
GTTTATTGTTTCCCTCAATCCAACATCGGTTGATGTTAATTCGATTGTAATGGGAAATATTTTAGGCATTGCTGATGATG
ACTTGTGGCAGGTGGTACTGATTATTGCGATTTCGTTACTGGGTTTAATCCTATTTTGGAAGGATTTGCTACTCGTCTTT
TTTGACGAACACCACGCATTGTCAGTCGGGCTTTCGCCATTACGCTATAAAGTGATTTTCTTTACCTTATTAAGTGCCTG
TGTAGTAGTGGCTCTGCAAACGGTTGGGGCAATTTTGGTTATTGCGATGGTCGTCACGCCGGGAGCAACTGCTTATTTAC
TTACCGACCGTTTCCCTAGATTAGTGCTGATCGCAATGCTTATCGGCACGCTGACATCAGGGATTGGGGCATATTTAAGC
TACTTTTTAGACGGTGCAACCGGTGCGGTAATTGTGTGCTTACAAACCTTAATTTTCTTATTCGCATTCTGCTTTGCTCC
TAAATATGGCTTGATTACTCAAAAGCGGAAATTGCACCGTGTGGAGGTTCAAAATGCTTAA

Protein sequence : 
MLDLLLEPFTYNYMQKAIFVSMGVGLVCAFLSAFLMLKGWSLIGDALSHAVVPGVAIAYALKLPYAFGAFFSGILAALSI
LWVKSLTKIKEDAVIGFIFTTFFALGMFIVSLNPTSVDVNSIVMGNILGIADDDLWQVVLIIAISLLGLILFWKDLLLVF
FDEHHALSVGLSPLRYKVIFFTLLSACVVVALQTVGAILVIAMVVTPGATAYLLTDRFPRLVLIAMLIGTLTSGIGAYLS
YFLDGATGAVIVCLQTLIFLFAFCFAPKYGLITQKRKLHRVEVQNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 7e-70 60
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 6e-70 60
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 8e-70 60
sitC NP_461784.1 permease Virulence SPI-1 Protein 8e-70 60
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 7e-70 60

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
D648_5410 YP_007668053.1 iron transport system membrane protein BAC0441 Protein 2e-81 71
D648_5410 YP_007668053.1 iron transport system membrane protein BAC0351 Protein 4e-70 60

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
D648_5410 YP_007668053.1 iron transport system membrane protein VFG0527 Protein 3e-70 60