Gene Information

Name : D648_25420 (D648_25420)
Accession : YP_007670049.1
Strain : Mannheimia haemolytica USDA-ARS-USMARC-185
Genome accession: NC_020834
Putative virulence/resistance : Virulence
Product : Capsule polysaccharide modification protein HcsB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2542179 - 2543411 bp
Length : 1233 bp
Strand : -
Note : Capsule polysaccharide export protein COG3562; Capsule polysaccharide modification protein HcsB of Proteobacteria UniRef RepID=A3N2Z4_ACTP2

DNA sequence : 
ATGGAACATTATTTAGATGAGCTAATCATCAATAGCCAGAGAATTTTATTGTTACAAGGCCCGATAGGCTCTTTTTTCAC
TGAGTTTGCTCGTTGGTTAGAAAGTGAGCAAAAAGAGGTCTTCAAGTTAAATTTTAATGGCGGAGATGAATATTTCTATC
CAAATAATAGCCCGAATACTTTTCCTTACTATGATAGCTTAGATAATTTTGAAGCCTATTTAATTCAGTTTTGCCAAACT
CATCAAATAGATAATATCTTATGTTTTGGCGATAATCGTTATTATCATAAAGTGGCTAAAAACGTTTGCTTGAAGTTAAA
GTTGGTCTTTTGGGCGTTTGAAGAAGGGTACTTTAGGCCAGAATATATTACGTTGGAAAAATGGGGTGTAAATGCTTTTT
CTCCAATCCCGAAAAATCACACTTTCTTTTTGCCTTATGCCGAGTTACCAGTAGTCAGTGAACCAGAAAAAGTATCTAAA
GGCTTTAGATGTATGGCGGGAAAAGCAATCCCGTACTATTGGAATGCCTATAAAAAACGTAAAGCATACGCAAAATATCA
GCATCATCGTTTTCTGAATCTCAAATACTACCTTAATTTATGGACAAGGTCGGGAATTAAGCGAATATGTTATTGGTTAC
ATGATAAAGGCTTTGCCAAGCGGGTAGAAAAAGGAGAGTTTGGTGAATTTTTCATTGTGCCTCTACAAGTTTATGATGAC
ACTCAAGTGAGGATTCATAGTGAACAAAAAAGTGTAGAGCGTTTTTTAAGGGAAGTTCTGAATTCCTTTGCCAAATTTGC
ACCGGCACATCTCAATTTAATTATTAAGCATCACCCGATGGATAGAGGATTTATAGATTATAAAATGGTGATTTATGAAT
TCTTAGAGCAATATCCCCAATTAAACGGTAGAGTTTTTTATATTCACGATGTGCCGTTACCTGTCTTTTTACGTTATGGG
AAAGGAATGGTGACTTTAAATTCAACCAGTGGGCTTTCTGCATTGCTCCATAATATGCCGGTCAAAACCTTAGGTAGAGC
CAATTATGATTTTGAGGGATTAACCGATAAACAGCCATTAGATACTTTTTGGGCTAATCCTCAGCCACCTAATTCGGAAG
TATTTAAAGGCTACAGACAATTTCATTTACATAAAACGCATATTAACGGTAATTTTTACCATAAATCGATTTTGCGTTAT
CCTTATAATTGGGAAAATGAAGCACACAGGTGA

Protein sequence : 
MEHYLDELIINSQRILLLQGPIGSFFTEFARWLESEQKEVFKLNFNGGDEYFYPNNSPNTFPYYDSLDNFEAYLIQFCQT
HQIDNILCFGDNRYYHKVAKNVCLKLKLVFWAFEEGYFRPEYITLEKWGVNAFSPIPKNHTFFLPYAELPVVSEPEKVSK
GFRCMAGKAIPYYWNAYKKRKAYAKYQHHRFLNLKYYLNLWTRSGIKRICYWLHDKGFAKRVEKGEFGEFFIVPLQVYDD
TQVRIHSEQKSVERFLREVLNSFAKFAPAHLNLIIKHHPMDRGFIDYKMVIYEFLEQYPQLNGRVFYIHDVPLPVFLRYG
KGMVTLNSTSGLSALLHNMPVKTLGRANYDFEGLTDKQPLDTFWANPQPPNSEVFKGYRQFHLHKTHINGNFYHKSILRY
PYNWENEAHR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lipB NP_273146.1 capsule polysaccharide modification protein Not tested IHT-A Protein 1e-93 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
D648_25420 YP_007670049.1 Capsule polysaccharide modification protein HcsB VFG0705 Protein 2e-116 61
D648_25420 YP_007670049.1 Capsule polysaccharide modification protein HcsB VFG0693 Protein 2e-116 61
D648_25420 YP_007670049.1 Capsule polysaccharide modification protein HcsB VFG0260 Protein 5e-94 53