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Name : D648_15990 (D648_15990) Accession : YP_007669111.1 Strain : Mannheimia haemolytica USDA-ARS-USMARC-185 Genome accession: NC_020834 Putative virulence/resistance : Unknown Product : type I restriction enzyme HindVIIP R protein Function : - COG functional category : - COG ID : - EC number : - Position : 1619354 - 1622512 bp Length : 3159 bp Strand : + Note : Type I site-specific restriction-modification system, R (restriction) subunit and helicases COG0610; type I restriction enzyme HindVIIP R protein of Proteobacteria UniRef RepID=T1RH_HAEIN DNA sequence : ATGATTACCATCAACGAAAACACCATTGAACAATCCGCCATTGCAACTTTGCAAAGCTTGGGCTGGGACTACACCTACGG CAAAAAAATTTTGGCAGGTTTAGAACACGAATGGCGGGAGCGAACCGCTGAGGTGATTTTAAAGCCGCTTTTGGCGCAAG CGATTGCAAAATTCAACCCGAATTTGCCCGCTTGTGAGGTGGAAAATGTGGTGGCACAGGTGTGCCGTGCCGACAGTGGC GATTTGGCGGAGCGTAATCGTCAGGCTTATGATTGGCTAAGAAATGGGGTCAAAATCACTTATCAGTTGTACGGTGAGCA GGTGTCTGATGTGGTGCAGCTGATTGATTTTCAGCGTCCAGAAAATAACGATTTTCGCATTGTCAATCAGCTGGATATTA GCGGCAAAAAAGGCAAACGCATTCCGGATTTGATTGGCTTTGTTAATGGCTTGCCGCTGGTGGTGTTTGAGCTGAAAAAT CCGCTCAAAGAAAATGCCGACATTGGCAAGGCGTTTGCCCAACTGCAAACCTATAAAGATGAAATTTCTGATTTGTTTGT GTTTAATCAGGCACTCGTGATTTCAGACGGCATTGTCGCCCGCATCGGTTCGCTGACCGCTGATTTCGACCGTTTTACCC CTTGGCGTGTGGTTGATGAAAAAAATCAGAGCAAACGCATTGTGTTTGAAGATGAACTCACCGCCCTGCTGCAAGGCGTG ATGACACCCAAAAATCTCTTGGATTATGTGCAGAATTTTGTGGTGTTTGAACGGGACGGCAAAAACCGCTTAATTAAGAA AATCGGAGCATATCATCAGTTTTATGGCGTGAATGAAGCGGTGGATTGCACCTTGCTTGCCGCCACAGGCAACCGCAAAA TCGGCGTGTTTTGGCATACGCAAGGTTCGGGCAAATCGCTTTCGATGCTGTTTTATGCAGGTAAAGTATTAAGCCAAAGC AGCCTGAAAAATCCAACTTTGGTGTTGGTAACCGACCGCAACGATTTGGACGGTCAGCTTTACGCCACTTTTTGCGGTGG CGAGGCACTGCTCAAACAAACGCCAATCCAAGCCGATGGGCGAGACGAACTCCGCTCTGCCCTTGCCAGTCGTTCGGCAG GCGGTGTGATTTTTACCACCATTCAAAAATTCGGCTTAATGGAGGGTGAGCTTGCCCACCCTGTATTAAACGAGCGGGAA AACATCATTGTGATTACCGATGAAGCACACCGCTCACAATATGGTTTTAGCCAAAAAATCAACCACAAAGGCGAGTATCG TGAGGGTTATGCCAAGCATTTACGCAGTGCATTGCCGAATGCCTCTTTTATTGGCTTTACTGGCACACCGATTGAACTTG ATGACAAAGACACCCAAGAAGTCTTCGGTAAATATGTCTCGATTTATGATTTTGAAGATGCGGTGGAAGATGGGGCAACC GTGCCGATTATTTATGAGCCACGCCAAATCAGCTTAGGCGAAAGTGGCGAGTTTTCCAAAGTGATGGAAGAGGCACAACA ACTGATTGATGACGATGAAAACAGCTATAACTTCCGCCTGCGTGAAAAACTGCACAGCGTGGATAGCCGTTTGCAAAAAA TGGCGGAAGATATTATTGCCCATTACGATGAGCGTACCAAACAGCAAGACGGCAAGGCGATGGTTGTGGTGATGAGCCGT GCCATTTGCGTGAAATTGTACGAAAAAATCACCGCACTTCGTCCAGAATGGCACTCAAACGATGTGCTTCAAGGCAGCAT TAAAATTGTGATGACAAGTAATGCCAGCGACCCTGCCGAGTGGCAAAAACACAATCAGGATAAGAAAACCTTAGAAAAAC GCTTTAAAGACCCAGACGATCCGCTCAACATCGTGATTGTGCGGGATATGTGGCTGACAGGCTTTGATGCGCCCTGCTGT AACACAATGTACATTGATAAACCAATGAGCGGACACAACCTGATGCAGGCAATCGCTCGGGTAAATCGGGTATTTCGCAA CAAAAGCCGTGAAAATGGCGGCTTGATTGTGGATTATGTGGGCTTGACCGATGAGCTGGAAAAAGCGATGAAGCAGTACA CCAACGCAGGCGGTAAAGAAAAGCCGGTGCGGGACATTTCAGCGGTGCTGGAAAAAATGGTGGAACATATCACGGTCATT CGTGGGCAATTTGCCACACCGATTGACGGACAAGCGGTTGATATTGCCAAAATGTTGCAAATCAGCGAACCGCCTAAACT GCTCAATGCGATTTTGACATCAGCCAACCATATTCTTGCCCTAGACCGCATTCAGCCACCTGATAACACTGCCAAAGACA AAACCCCACGCAAAAACGCCTTTTTGCAATCGGTACGCTTGGCGAAAAAAGGTTATGCTTTGTGTGGGGCATTAAAAGCA GTTGAACCCTATAAACAGGAACTGGCGTTTTATGATGCAGTGCGTGCCACCATTATCAAAAACAGCACCGCTCCTCGCAA TTCTTCGAGCGAAAATGACCGCTTGTTGCAGCTTACCGCCTTGATGAATCGTGCGGTACAGTCGGATGGTGTGGTGGATT TATTTGATTTGCTGAAAAAAGACCGCCCAAACATCAACCTGCTTTCTGATGAGTTTTTGGAAACAGTAAAAAACAGCCCA ACCAAAGATTTGTGGCTATCAGCAATGGAGCGTTATCTTGCCTCACAACTGCGAGAGCAAAGCGGTGCCAATCTTGCCAC AAAAAAAGCATTTGAACAGAAACTCAAAGAGGCGATGAACCAATACCACAACCACAATTTAAGCGTATTGGAAATTTTAG AAGAGCTGATCGCCCTCGCCAAAGAGTTTGAAGCCCGCCAAAAACGAGGGGAAGCGTTGGGACTAAGCCCTGCGGAAATG GCGTTTTATGATGCTTTGGCACGTAATGAAAGTGCGGTGCGGGAAATGGGCGATGAGGTATTGATGAAACTTGCCAAAGA CATTACCGATAAATTACGCAAATCGGTCACCGTAGATTGGCAATATAAAGACTCGGTTCGTGCCAAAATGCGAACCTTAA TCCGCATTGCTCTGCGTACCTATAAATACCCGCCCGATTTACAGGCGGAAGCGATTGAGTTTGTGTTGCAACAAGCGGAA GAGATCGCCGGAGAGTTCGCTATCACCGAAACGGCGTAA Protein sequence : MITINENTIEQSAIATLQSLGWDYTYGKKILAGLEHEWRERTAEVILKPLLAQAIAKFNPNLPACEVENVVAQVCRADSG DLAERNRQAYDWLRNGVKITYQLYGEQVSDVVQLIDFQRPENNDFRIVNQLDISGKKGKRIPDLIGFVNGLPLVVFELKN PLKENADIGKAFAQLQTYKDEISDLFVFNQALVISDGIVARIGSLTADFDRFTPWRVVDEKNQSKRIVFEDELTALLQGV MTPKNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYGVNEAVDCTLLAATGNRKIGVFWHTQGSGKSLSMLFYAGKVLSQS SLKNPTLVLVTDRNDLDGQLYATFCGGEALLKQTPIQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELAHPVLNERE NIIVITDEAHRSQYGFSQKINHKGEYREGYAKHLRSALPNASFIGFTGTPIELDDKDTQEVFGKYVSIYDFEDAVEDGAT VPIIYEPRQISLGESGEFSKVMEEAQQLIDDDENSYNFRLREKLHSVDSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSR AICVKLYEKITALRPEWHSNDVLQGSIKIVMTSNASDPAEWQKHNQDKKTLEKRFKDPDDPLNIVIVRDMWLTGFDAPCC NTMYIDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTDELEKAMKQYTNAGGKEKPVRDISAVLEKMVEHITVI RGQFATPIDGQAVDIAKMLQISEPPKLLNAILTSANHILALDRIQPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGALKA VEPYKQELAFYDAVRATIIKNSTAPRNSSSENDRLLQLTALMNRAVQSDGVVDLFDLLKKDRPNINLLSDEFLETVKNSP TKDLWLSAMERYLASQLREQSGANLATKKAFEQKLKEAMNQYHNHNLSVLEILEELIALAKEFEARQKRGEALGLSPAEM AFYDALARNESAVREMGDEVLMKLAKDITDKLRKSVTVDWQYKDSVRAKMRTLIRIALRTYKYPPDLQAEAIEFVLQQAE EIAGEFAITETA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 48 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 42 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 41 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 41 |
