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Name : D648_11110 (D648_11110) Accession : YP_007668623.1 Strain : Mannheimia haemolytica USDA-ARS-USMARC-185 Genome accession: NC_020834 Putative virulence/resistance : Unknown Product : F pilus assembly Type-IV secretion system for plasmid transfer Function : - COG functional category : - COG ID : - EC number : - Position : 1103578 - 1106415 bp Length : 2838 bp Strand : + Note : F pilus assembly Type-IV secretion system for plasmid transfer of Gammaproteobacteria UniRef RepID=F4HBL5_GALAU DNA sequence : ATGATGTCTTTTTTAAGTGAGGTATTTTCCTCTTTCAAACCGACTAAGACAGAGGTTATATCAAGTGAACCAAATGAAAA TTCAGGTGAGTCTGACATCATTCAAAATAAAATGAGTGAGGTAAATGGCGAGGTTCAACCATTAAAACGCAGTGGAAAAC TCACCCTGTCACAGCATCACCGTCGGTTATACTCACAAGCCCCCTCTTTTATTGATCATCTACCTTGGGGAGAATATTTG AATCAACACGGTGTGATACTCCTCGATGATGCTCGTAGTGTCGGGGCGGTATTTGATATCAAGCCGATTGGTACAGCAGG ACGTAGTATTGAGTTTTTAAGCAGGATACGAAATCTTGTCAAAGATGCCTTACAAGATAGCTTTGATGAGCTGGATATAA ATCCTTACGTCGTGCAATTTTATTGCCAAGATAGCGATGATTTACAGCCTTATATTGATCAGCTACGGAATTATATCTCG CCTATTGCCCAAAATAGTGCATTTAGCGAAGAATGGTTACGAGTACAAGCCAAGCATTTCAAGGATATTGGTAAACCAGA AGGGCTTTTTATTGATGACAGAGTGACAAATACCGCTTGGTCTGGACGTATTCGGAGTACCAAAATGGTGATTTATCGAT ATGTAGATAAGTCCAATGATTCCAATGAAAATCTTATTATTGAGCAGCTTAATAATGCTTGTTCCCGAATCAATGGGGCT CTAACAACGGCTGGATTACAGTTACAGCGGCTAGATGGTGAACAAATTCGCCAATGGTTATTGCGTTGGTTTAATCCTAA TCCATCTATTAATTTTGAGGGATTAAGCAACAATGATTGTTACCATCTTTTTGGCAAACAAACCTCAAATGATGATCTTC CATTAGCTTTTACTGATTTCAGTGAGGATTTATTTTATTCACAGCCGAGAAATGAAGGTAGCTATTGGTATTTTGACGGA CAGCCACACGAGGTTGTTGTCGTCAATAATTTAAGAAAACAACCAGAAGTGGGCTTAATGACCGGCGAGATTACTCGTGG GCGTAATATTAATGCGTTATTTGACCTATTGCCAGAATCAACCATCATGGCAATTACCATCGTCATCCATCCTCAGGATA AGTTGGAAGCACATTTAGAAAAAATCAGTAGTCGAGCAGTGGGTGAGAATTTTGAGTCAAAATACCTAAAAGAAGACTGT CAAACTGTACAGGCTTATCTTAAAGAGGGTCATAAACTCTATCAAGCAGCTATTGCATTTTACGTTCGAGGTAAGGACGA AAAGGAATTGCGTACTCGATCTCGCCAACTAAGAACAATTCTGCTCAGTAACAACTTAGAACCCGTGAAGGAAAATGCAG AAATTGCCCCTCTTAATAGCTATTTACGTTGGTTACCAATGAACTTTAACCCACAAATGGATGCGAGGTCACATTATTAT ACTAAATACTATTTTGTCCAACATTTAGCAAATTTACTGCCTATTTTTGGTAGAGACATCGGTACAGGACATCCGGGCAT TACCTATTTTAACCGAGGTGGTGCCCCGTTTAATTTCGATCCGTTTAACCGTAAAGACAGAACCAAAAACGCTCACAAAC TCTTATTAGGACCAACAGGCTCAGGAAAATCAGCAACACTATGTGGGCAATTATGTCAGGCTATGGCCGTTTATCGTCCT CGGACGTTTGTTGTGGAGGCAGGAAATTCATTTGGTTTATTAGCGGACTATGCAGAACGTTTTGGACTGACCGTAAATCG CATTACGTTAGCCCCAAACAGTGGCATTGTCTTACCGCTCTTTTCAGAAGCCCATCGGTTATTGGATATGGAATTAAATC CGGAAGATGTGCCGGAAGACATTGAGGATAACGATGACACTGATGATGAAGGCGATATGCAACGAGATTTGTTGGCCGAA ATGGAGCTGACAGCACGTTTAATGATCACTGGTGGCGAAAAGAAAGAAGATGAAAAAATGAGCCGTGCTGACAGAGCAGC CATTCGACGTGCCATTTTAAATGCGGCTCGCCAAACTAAATCCGAAGGCAGACAAACGCTAACTGAAGATGTGAAAAAGG CATTGGAGGCTATAAGCCGTGATGAAAATACTCGTGAAGAACGGCGTACTCGTTTGGCCGAAATGGCAGAATCATTGGAA ATGTTCTGTACCGGAGTCAATGGACAGTTTTTCAACCGAGAAGGTGAAATTTGGCCGGAAGCAGATCTGACATTGGTTGA TCTAGCCATGTTTGCCCGGGAAGGCTATGAAGCAGAATTGGCCATTTCCTATATTTCTCTCATTAACCATATCAACAGTC TCGGTGAAAAATACCAGCATAGCGACAGGATGATTCTGAATGTAACCGATGAATCACACATTATTACGGCCAATCCATTA TTGGCTAAATTCTTGGTAAAAGGCTCAAAAATGTGGCGTAAATTGGGGATTTGGCTCTGGCTTGCGACACAGAATATGGA TGACTTCCCCAATGAAGCAGCAAAATTACTGTCAATGGTCGAATGGTGGGAATTGTTGAATGTGTCTGCTAGTGAAATTG ATGAAATCAATCGTTTCCGGAAACTGTCAGAAGCTCAGAAAATGATGTTATTGTCTGCCAAAAAATCAGATCGTAAATAT ACCGAAGGCGTTGTTTTAGCAACAAATATGGAGGCTCTATTCCGTGTTGTACCGCCTAGCTTATTTTTAGCTCTGGGAAT GACGGAAAAGCACGAAAAAGCGGAACGTAAGCAATTGATGATGCAACACGGCTATACCGAGCTCGATGCAGCCTTAGAGG TTGCAGCTCGGATTGATAAAGCAAGAGGAATACACTAA Protein sequence : MMSFLSEVFSSFKPTKTEVISSEPNENSGESDIIQNKMSEVNGEVQPLKRSGKLTLSQHHRRLYSQAPSFIDHLPWGEYL NQHGVILLDDARSVGAVFDIKPIGTAGRSIEFLSRIRNLVKDALQDSFDELDINPYVVQFYCQDSDDLQPYIDQLRNYIS PIAQNSAFSEEWLRVQAKHFKDIGKPEGLFIDDRVTNTAWSGRIRSTKMVIYRYVDKSNDSNENLIIEQLNNACSRINGA LTTAGLQLQRLDGEQIRQWLLRWFNPNPSINFEGLSNNDCYHLFGKQTSNDDLPLAFTDFSEDLFYSQPRNEGSYWYFDG QPHEVVVVNNLRKQPEVGLMTGEITRGRNINALFDLLPESTIMAITIVIHPQDKLEAHLEKISSRAVGENFESKYLKEDC QTVQAYLKEGHKLYQAAIAFYVRGKDEKELRTRSRQLRTILLSNNLEPVKENAEIAPLNSYLRWLPMNFNPQMDARSHYY TKYYFVQHLANLLPIFGRDIGTGHPGITYFNRGGAPFNFDPFNRKDRTKNAHKLLLGPTGSGKSATLCGQLCQAMAVYRP RTFVVEAGNSFGLLADYAERFGLTVNRITLAPNSGIVLPLFSEAHRLLDMELNPEDVPEDIEDNDDTDDEGDMQRDLLAE MELTARLMITGGEKKEDEKMSRADRAAIRRAILNAARQTKSEGRQTLTEDVKKALEAISRDENTREERRTRLAEMAESLE MFCTGVNGQFFNREGEIWPEADLTLVDLAMFAREGYEAELAISYISLINHINSLGEKYQHSDRMILNVTDESHIITANPL LAKFLVKGSKMWRKLGIWLWLATQNMDDFPNEAAKLLSMVEWWELLNVSASEIDEINRFRKLSEAQKMMLLSAKKSDRKY TEGVVLATNMEALFRVVPPSLFLALGMTEKHEKAERKQLMMQHGYTELDAALEVAARIDKARGIH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| Pmu_03070 | YP_005176206.1 | conjugative transfer ATPase TraC-like, PFL family | Not tested | ICEPmu1 | Protein | 0.0 | 97 |
| virB4 | CAI36125.1 | VirB4 component | Not tested | PPHGI-1 | Protein | 0.0 | 52 |
| YE3482 | YP_001007641.1 | hypothetical protein | Not tested | YAPI | Protein | 0.0 | 51 |
| api39 | CAF28513.1 | hypothetical protein | Not tested | YAPI | Protein | 0.0 | 51 |
| ORF SG57 | AAN62279.1 | hypothetical protein | Not tested | PAGI-3(SG) | Protein | 0.0 | 51 |
| YpsIP31758_3705 | YP_001402659.1 | hypothetical protein | Not tested | YAPI | Protein | 0.0 | 50 |
| unnamed | ABR13362.1 | hypothetical protein | Not tested | PAGI-5 | Protein | 0.0 | 50 |
| ORF C47 | AAN62141.1 | hypothetical protein | Not tested | PAGI-2(C) | Protein | 0.0 | 50 |
| STY4573 | NP_458658.1 | hypothetical protein | Not tested | SPI-7 | Protein | 8e-174 | 49 |
| PMI2576 | YP_002152295.1 | hypothetical protein | Not tested | Not named | Protein | 0.0 | 48 |
| RL022 | AAP84149.1 | conserved hypothetical protein | Not tested | PAPI-1 | Protein | 0.0 | 48 |
| EXA33 | ABD94642.1 | conserved hypothetical protein | Not tested | ExoU island A | Protein | 0.0 | 48 |
