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Name : D650_740 (D650_740) Accession : YP_007664856.1 Strain : Mannheimia haemolytica USDA-ARS-USMARC-183 Genome accession: NC_020833 Putative virulence/resistance : Virulence Product : Capsule polysaccharide modification protein LipA Function : - COG functional category : - COG ID : - EC number : - Position : 70944 - 73034 bp Length : 2091 bp Strand : + Note : Capsule polysaccharide export protein COG3563; Capsule polysaccharide modification protein LipA of Proteobacteria UniRef RepID=LIPM_NEIMA DNA sequence : ATGCTTAGCTATTTAGTGTTTTTTAGTAAAATTATAAAAATCCCTAATTTAAAAGGTTTTTTACCTCATTGTGAAATTAG GCGAAGACCTCTTGTGGGAAAAACCTTTATTGCTCAAAAAAGACCGAACCAAATCATCGGCTGGGGGCTTCGTCCTTCAG CGGTGGGATCAAGAGCTTATGCACAAAAACATCAACTTCCCTATATTGCATTAGAAGACGGCTTTTTACGCTCACTAGGG CTGGGTGTAAAAGGCTATCCGCCATTTTCTTTAGTTTATGATGATATAGGTATTTATTACGATACCACCTGTCCTTCTCG TTTAGAAAAGTTATTGCTTGAAAAACCTTTACAGGATCAAGAGCAAATCAAGCTTGCAGAGAGAGCATTATCTCAAATCT TAACTTACGGACTTTCTAAATATAATCACGCACTAGATTTTAGTGAAATCCCCTCTGCCAAAGAAAAAATCGTGTTAGTT ATTGACCAAACCTTTGGTGATATGGCGGTGAAATATGGTCAAGCGAGTGAAGTGGATTTCAATAAAATGTTGGAAACGGC AATCAGTGAGAATCCAGAGGCTCAAATTTGGGTAAAAACTCACCCCGATGTATTAAGTGGCAAGAAGAAAGGCTATTTGA CCGATTTACCTCAATATACTGATAGGGTCAGAATTATTACTGAAGATGTGAATCCGGCAAGTTTGATTAAATTGTGTGAG AAAGTCTATTGCGTAACTTCGCAAATGGGGTTTGAGGCATTATTATTAGGTAAAAAAGTGGTTACCTTTGGTGTACCGTG GTTTGCCGGTTGGGGGGTAACAGATGATCGTAACGAAGCGGTTCAACTATTAGTTCAACAAAATAGACGGAAAGATCGTT CATTACTGCAACTTTTTTATGCTGCGTATTTTGATTACAGCCGTTATATTAATCCGAATACCGGTGAGAAAGGCTCTATT TTTGATGTCATCGATTATCTATATAAAGCCAAAAGATTAAATCAGCGCTTAAGTGGGAATCTATACTGTATTGGTATGTC GCTATGGAAACAGGCGGTAATTAAGCCGTTTTTTAATTTGCCACAATGTCGATTACATTTTGTTCGTTCGCTAAATTCTT TAAAAAAACGACCGCTTGCAGATAATGCAAAAATTTTAGTTTGGAGCAATGGCAAAGCGGATGTCTTGCAATTTGCACAG CAGAATAATATTCCATTGTTAAGAATGGAAGATGGATTCATTCGCTCTGTCGGACTAGGCGCTAATTTAGTTGCACCGCT TTCTTTAGTAGTCGATGATTTAGGCATTTATTTTAATGCAGAGAACACTTCACGATTAGAACAAATTTTATTGAGTGCAG AGCATTTTTCTGAAACTGATTTGTCTTATGCTGAAACATTAAGGCAGAAATTGGTGGCTAGCCATATTGGAAAATATAAT GTGGGCGGTGGCGATGTAAAATTTAATGCTCAAGGTAAAAAAATAATTCTTGTACCGGGGCAGGTAGAAGATGACGCTTC GATCAAATCAGGTTCTCCACAAATTAAAAGAAATCTGGATTTACTGAAAAAAGTGAGGGAATTAAACCCTAGTGCCTATA TTATTTATAAGCCTCACCCTGATGTGGTAAGTGGTAATCGAGTCGGTCAGATTCCTACGGCAGAAACACGCAGGTTTGCG GATCAGATGGTGGATAATGCCAATATTTTAGATTGTATTTTAATTGCAGATGAAGTGCATACAATGACATCTTTAGCCGG TTTCGAAGCATTATTAAGAGGTAAAAAAGTGCATTGCTACGGATTACCTTTTTATGCTGGTTGGGGATTGACGGAAGATA GATTGAAGTCGGCACGCAGAGGTAAATCTTTGACATTATCTCAGTTAATTGCCGCAACATTGATATATTACCCTCTGTAT GTTGATCCTATAAGCAGGCAGTTTATTGATGCCAATCAAGCGATTCATATATTGTCACAACAGAAACGAAACCTAACCAA TCAAAGGATTAAACGTTCTTGGGTGAGTAAACAATATGGAAAATTACAGCATCTTTATCGTGCGTTTAAATATGCTTCCC ACACTAAATAA Protein sequence : MLSYLVFFSKIIKIPNLKGFLPHCEIRRRPLVGKTFIAQKRPNQIIGWGLRPSAVGSRAYAQKHQLPYIALEDGFLRSLG LGVKGYPPFSLVYDDIGIYYDTTCPSRLEKLLLEKPLQDQEQIKLAERALSQILTYGLSKYNHALDFSEIPSAKEKIVLV IDQTFGDMAVKYGQASEVDFNKMLETAISENPEAQIWVKTHPDVLSGKKKGYLTDLPQYTDRVRIITEDVNPASLIKLCE KVYCVTSQMGFEALLLGKKVVTFGVPWFAGWGVTDDRNEAVQLLVQQNRRKDRSLLQLFYAAYFDYSRYINPNTGEKGSI FDVIDYLYKAKRLNQRLSGNLYCIGMSLWKQAVIKPFFNLPQCRLHFVRSLNSLKKRPLADNAKILVWSNGKADVLQFAQ QNNIPLLRMEDGFIRSVGLGANLVAPLSLVVDDLGIYFNAENTSRLEQILLSAEHFSETDLSYAETLRQKLVASHIGKYN VGGGDVKFNAQGKKIILVPGQVEDDASIKSGSPQIKRNLDLLKKVRELNPSAYIIYKPHPDVVSGNRVGQIPTAETRRFA DQMVDNANILDCILIADEVHTMTSLAGFEALLRGKKVHCYGLPFYAGWGLTEDRLKSARRGKSLTLSQLIAATLIYYPLY VDPISRQFIDANQAIHILSQQKRNLTNQRIKRSWVSKQYGKLQHLYRAFKYASHTK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lipA | NP_273145.1 | capsule polysaccharide modification protein | Not tested | IHT-A | Protein | 0.0 | 59 |
| kpsC | YP_854335.1 | capsule polysaccharide export protein KpsC | Not tested | PAI I APEC-O1 | Protein | 2e-137 | 49 |
| kpsC | AAZ04470.1 | capsule polysaccharide export protein | Virulence | PAI I APEC-O1 | Protein | 1e-137 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| D650_740 | YP_007664856.1 | Capsule polysaccharide modification protein LipA | VFG0692 | Protein | 0.0 | 60 |
| D650_740 | YP_007664856.1 | Capsule polysaccharide modification protein LipA | VFG0704 | Protein | 0.0 | 60 |
| D650_740 | YP_007664856.1 | Capsule polysaccharide modification protein LipA | VFG0259 | Protein | 0.0 | 59 |
