Gene Information

Name : D650_670 (D650_670)
Accession : YP_007664849.1
Strain : Mannheimia haemolytica USDA-ARS-USMARC-183
Genome accession: NC_020833
Putative virulence/resistance : Virulence
Product : Capsule polysaccharide export protein BexD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 61999 - 63183 bp
Length : 1185 bp
Strand : -
Note : Periplasmic protein involved in polysaccharide export, contains SLBB domain of b-grasp fold COG1596; Capsule polysaccharide export protein BexD of Proteobacteria UniRef RepID=BEXD_HAEIF

DNA sequence :
ATGAAACAAAAAAAATTAAATACTACATTATTATTTATAACATTATCATTAATTTCAGCCTGCTCTAGCCTACCAACGTC
CGGCCCAAGCTATAGCGAAATCTTAGCAAGTAATGAAAATACAGCTGAAACGCAGTTGCCTGAAGTCAATTTAATCAAGT
TAGATAACATCACCGTACAAAACTTATACCAAGAGCAACAATCTCAACGTTTTTCAGGATTTGATGGCTCAATGGGTGTG
GGTGGTTATGCTGGAACAGTTAATGTAGGCGATATATTAGAAATATCCATTTGGGAAGCGCCACCTGCCGTGCTATTTGG
TGGAACATTTAGTGCTGAAGGGCAAGGTAATGGGCATTTAACCCAATTACCTCAGCAAATGGTGAACAAAAATGGAACGG
TAACTGTGCCTTTTATCGGTAATATTAAAGTTGCTGGAAAAACACCTGAAGTAATTCAGAATCAAATTGTCGGAGCATTG
AGCCGTAAAGCTAATCAACCTCAAGCATTAGTTCGTATTGCGAATAACTTGTCGTCTGATGTTACGGTTATCCGCCAAGG
AAATAGCATTCGTATGCCATTAAGTGCCAATAATGAGCGTATTTTAGATGCAGTTGCGGCAGTAGGTGGTACAAGCGAAA
ATATTGAAGATGTAACAGTTCGTTTAACACGTGGAAATAAAGTGCGTTCAATGGCGTTTGAAACATTAATTGCTGACCCC
TCACAAAATATTACATTACGTTCAGGTGATGTTATTGCTTTAATGAATACTCCTTATAGCTTTACCGGATTAGGAGCAGT
AGGTAATAATCAACAAATGCGTTTTTCAAGTAAAGGCATTACCCTTGCTGAAGCTATCGGTAAAATGGGAGGATTAATTG
ATGAGCGTTCAGACCCTCGTGGTGTGTTCGTATTCCGCCATATTCCTTTTACACAATTAGATTACGATAACCAAGCTCAA
TGGCGTGAAAAAGGTTATGCAGAGGGAATGGACGTTCCAACTGTTTATCAGGTGAATTTATTAAAACCGCAATCAATGTT
TTTATTGCAGCGTTTCCCTATTCAAGATAAAGATATTGTATATGTGTCGAATGCTCCACTGTCTGAATTTCAAAAATTCT
TGAGAATGATTTTCTCCATTACTACACCAATTACAGGTACAGCTAATACAATTAGAGCGTACTAA

Protein sequence :
MKQKKLNTTLLFITLSLISACSSLPTSGPSYSEILASNENTAETQLPEVNLIKLDNITVQNLYQEQQSQRFSGFDGSMGV
GGYAGTVNVGDILEISIWEAPPAVLFGGTFSAEGQGNGHLTQLPQQMVNKNGTVTVPFIGNIKVAGKTPEVIQNQIVGAL
SRKANQPQALVRIANNLSSDVTVIRQGNSIRMPLSANNERILDAVAAVGGTSENIEDVTVRLTRGNKVRSMAFETLIADP
SQNITLRSGDVIALMNTPYSFTGLGAVGNNQQMRFSSKGITLAEAIGKMGGLIDERSDPRGVFVFRHIPFTQLDYDNQAQ
WREKGYAEGMDVPTVYQVNLLKPQSMFLLQRFPIQDKDIVYVSNAPLSEFQKFLRMIFSITTPITGTANTIRAY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrA NP_273135.1 capsule polysaccharide export outer membrane protein Not tested IHT-A Protein 3e-97 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
D650_670 YP_007664849.1 Capsule polysaccharide export protein BexD VFG0699 Protein 3e-143 75
D650_670 YP_007664849.1 Capsule polysaccharide export protein BexD VFG0687 Protein 3e-143 75
D650_670 YP_007664849.1 Capsule polysaccharide export protein BexD VFG0255 Protein 1e-97 53